Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 2.7e-177 625.2 308 100.0
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 4.1e-165 584.7 308 92.9
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 5.0e-155 551.2 308 86.7
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 2.9e-147 525.4 303 84.8
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 2.0e-143 512.7 308 80.8
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.4e-141 505.8 308 80.8
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 3.2e-141 505.4 308 77.9
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.7e-140 502.3 311 77.5
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 3.9e-139 498.4 308 76.6
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 6.6e-139 497.7 349 73.1
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.1e-138 496.9 309 76.7
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 1.6e-137 493.0 309 77.0
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.8e-137 492.3 309 77.0
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 6.2e-137 491.1 309 76.1
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 8.0e-137 490.7 309 76.4
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 1.1e-136 490.3 309 75.4
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.8e-136 489.6 310 76.8
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 4.0e-136 488.4 310 76.8
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 5.2e-136 488.0 310 75.5
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.8e-136 487.6 308 74.4
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.8e-136 487.6 308 74.4
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 6.8e-136 487.6 309 76.1
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 8.9e-136 487.3 310 76.8
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.2e-135 486.9 308 74.7
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 3.4e-135 485.3 309 75.1
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 4.4e-135 485.0 309 76.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 7.5e-135 484.2 310 76.1
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 7.5e-135 484.2 310 77.1
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 2.9e-134 482.3 304 74.7
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 4.9e-134 481.5 304 74.7
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 8.3e-134 480.7 308 74.7
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 8.3e-134 480.7 309 72.8
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.4e-133 479.9 316 72.8
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.4e-133 479.9 309 74.1
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.4e-133 479.9 310 76.8
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.9e-133 479.6 304 74.3
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.2e-133 478.8 308 73.4
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 7.0e-133 477.6 304 74.3
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 3.5e-132 475.3 309 72.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 3.5e-132 475.3 309 72.5
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 4.6e-132 474.9 308 73.7
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 1.0e-131 473.8 313 74.4
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.0e-131 473.8 307 73.3
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 1.3e-131 473.4 324 70.7
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 2.3e-131 472.6 308 72.7
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.5e-130 469.9 310 74.2
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 2.5e-130 469.2 305 73.1
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 3.3e-130 468.8 309 73.5
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 7.3e-130 467.6 306 75.2
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 9.5e-130 467.2 310 71.6
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 2.8e-129 465.7 306 72.9
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 4.0e-128 461.8 304 73.0
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.5e-127 459.9 305 72.5
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.4e-127 458.8 306 71.2
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 7.5e-127 457.6 305 73.1
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 1.1e-125 453.8 306 71.2
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 1.4e-125 453.4 305 72.5
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 3.2e-125 452.2 387 61.5
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.2e-125 452.2 306 71.2
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 2.1e-124 449.5 306 69.9
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 2.1e-124 449.5 306 71.2
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 7.8e-124 447.6 302 70.9
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 8.6e-123 444.1 305 68.9
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 8.6e-123 444.1 313 67.7
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.1e-122 443.7 289 74.7
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 2.5e-122 442.6 276 75.4
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 2.1e-121 439.5 305 69.5
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 3.6e-121 438.7 305 69.5
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 4.7e-121 438.3 310 67.7
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 6.2e-121 438.0 304 69.7
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 8.1e-121 437.6 305 66.2
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 8.1e-121 437.6 305 69.5
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 8.1e-121 437.6 326 66.0
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 1.1e-120 437.2 305 69.8
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.1e-120 437.2 310 67.7
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.1e-120 437.2 310 67.7
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.4e-120 436.8 305 69.2
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 1.8e-120 436.4 304 69.4
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 2.4e-120 436.0 310 68.4
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 5.2e-120 434.9 310 67.7
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.2e-120 434.9 284 76.1
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 1.2e-119 433.7 305 67.2
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.2e-119 433.7 305 68.9
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.2e-119 433.7 305 67.9
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.6e-119 432.6 310 67.4
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.4e-119 432.2 306 68.6
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.9e-118 429.1 310 66.5
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 6.4e-118 427.9 311 65.9
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 6.4e-118 427.9 311 65.9
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.9e-117 426.4 311 66.6
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 3.2e-117 425.6 308 68.5
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 2.7e-116 422.5 328 61.3
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 1.0e-115 420.6 338 62.1
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 3.9e-115 418.7 306 68.6
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.2e-111 407.1 305 65.2
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 1.5e-111 406.8 297 66.7
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 7.6e-111 404.4 306 64.4
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.1e-109 400.6 240 79.2
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.2e-108 397.1 248 75.8
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 5.1e-107 391.7 244 74.6
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.1e-104 384.0 309 60.8
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 4.9e-102 375.2 249 72.3
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 4.2e-101 372.1 306 62.4
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 7.1e-101 371.3 308 60.1
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 4.5e-95 352.1 241 68.0
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 2.9e-94 349.4 209 78.0
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 4.9e-86 322.0 211 71.1
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 5.5e-85 318.5 295 52.5
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.6e-84 317.0 300 54.3
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 1.4e-80 303.9 294 51.4
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 5.5e-77 292.0 292 52.1
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.6e-68 263.8 289 44.6
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-61 241.1 147 76.2
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-58 231.1 145 75.2
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 8.5e-54 214.9 317 41.0
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.1e-53 214.5 180 55.0
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.1e-53 214.5 288 39.6
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 6.3e-49 198.7 163 62.0
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.8e-40 170.6 184 54.3
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 7.0e-40 168.7 149 58.4
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.6e-39 167.5 149 59.1
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 7.8e-31 138.7 96 67.7
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 8.6e-30 135.2 97 67.0
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.9e-29 134.0 100 62.0
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.2e-25 120.6 66 84.8
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.9e-21 107.5 71 76.1
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.4e-18 96.7 70 62.9
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.7e-17 93.2 69 63.8
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.9e-16 90.9 64 65.6


User provided reference genes

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