Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1677.9 854 100.0
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1513.8 858 90.1
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1379.4 862 81.8
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1377.1 862 81.7
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1371.3 860 80.1
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1366.7 862 80.9
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1362.1 890 79.1
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1321.2 766 86.7
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1320.8 862 79.1
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1309.3 864 76.6
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1276.5 861 75.8
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1274.6 864 74.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1261.9 874 73.9
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1261.1 863 74.6
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1260.0 868 74.7
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1249.2 857 74.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1241.9 856 73.4
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1235.3 867 73.2
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1231.1 859 73.2
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1228.0 852 72.7
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1227.6 862 72.6
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1225.7 870 72.3
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1224.2 869 72.5
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1221.5 852 72.3
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1220.3 867 71.0
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1216.4 864 71.9
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1214.9 861 72.5
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1214.9 877 71.0
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1211.1 823 75.1
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1209.1 854 72.6
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1207.6 854 72.5
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1205.7 854 72.4
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1200.7 887 70.0
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1197.2 863 70.8
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1196.4 862 71.1
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1189.5 865 71.6
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1187.6 835 71.4
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1186.4 863 70.1
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1179.1 863 69.3
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1178.7 861 70.0
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1177.2 868 68.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1175.6 852 70.5
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 866 69.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1171.8 875 69.5
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1169.5 860 70.7
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1167.9 862 69.0
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1166.8 861 69.7
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1166.0 770 76.1
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1166.0 865 69.6
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1163.7 861 70.6
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1163.7 863 70.1
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 859 69.2
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1157.1 847 69.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1154.8 871 67.5
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1154.4 861 67.9
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1154.0 860 68.8
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 860 68.7
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1152.9 861 69.6
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1152.9 857 68.6
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 859 68.1
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1150.6 868 67.7
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1149.4 867 68.4
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 855 68.2
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 864 68.4
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1146.3 857 68.3
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1146.0 972 64.0
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 944 65.1
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1142.5 857 68.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1139.0 863 68.1
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1132.5 850 67.4
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1129.0 839 68.8
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1124.4 1017 61.5
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1120.5 847 67.3
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1119.8 765 73.5
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1118.2 867 66.9
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1117.8 880 66.8
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 922 63.4
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1112.8 753 76.5
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1111.3 860 65.8
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1111.3 860 65.8
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1107.8 874 65.9
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1103.6 946 62.9
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1102.8 733 75.7
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 833 67.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1088.9 857 64.9
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1078.9 843 66.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1077.0 857 64.3
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 2.3e-311 1072.0 819 68.7
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.0e-310 1068.9 857 63.6
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.9e-309 1064.3 861 64.3
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 1.4e-308 1062.8 834 65.6
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 5.4e-308 1060.8 956 60.9
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 7.1e-308 1060.4 703 75.4
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 2.7e-307 1058.5 860 63.4
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 5.6e-305 1050.8 861 63.1
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 5.6e-305 1050.8 861 63.1
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-304 1049.7 859 63.4
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.2e-304 1049.7 859 63.2
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.6e-304 1049.3 859 63.4
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 1.1e-303 1046.6 856 63.2
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.8e-302 1040.8 895 62.8
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 3.2e-300 1035.0 739 70.5
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 4.1e-300 1034.6 830 64.2
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.4e-287 993.0 852 61.6
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.5e-286 989.6 759 66.0
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 7.6e-286 987.3 716 69.0
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 2.2e-277 959.1 723 66.8
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.0e-274 948.7 792 62.4
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 3.1e-271 938.7 847 58.6
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 8.7e-266 920.6 841 59.6
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.1e-265 920.2 842 59.4
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.3e-263 911.4 736 63.6
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.3e-255 884.8 703 66.6
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.4e-247 859.4 665 66.0
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.1e-241 840.5 534 79.0
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 2.8e-232 809.3 862 52.8
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 7.7e-230 801.2 776 58.4
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.6e-227 792.3 840 52.4
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 4.7e-211 738.8 540 69.3
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.2e-207 726.1 851 47.2
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.7e-203 712.2 853 47.1
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.0e-202 709.1 482 73.7
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.3e-200 704.1 836 46.7
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.1e-178 629.8 750 48.8
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 8.9e-178 628.2 462 69.9
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.6e-163 580.9 467 64.9
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.8e-163 580.1 398 74.6
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 6.2e-163 578.9 453 66.0
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 4.5e-161 572.8 542 57.0
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.1e-154 550.1 463 60.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 4.5e-153 546.2 803 42.1
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.5e-151 539.3 384 71.6
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.3e-147 528.1 491 59.3
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 2.5e-140 503.8 746 43.0
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 5.7e-124 449.5 462 53.0
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 4.8e-123 446.4 307 72.6
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.1e-122 443.7 386 59.1
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.2e-121 441.8 315 72.7
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.0e-117 426.8 359 64.3
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 4.5e-113 413.3 316 68.7
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.9e-112 410.6 360 61.9
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 3.0e-101 374.0 265 69.8
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 6.4e-91 339.7 291 61.5
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 7.0e-82 309.7 249 64.3
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.3e-79 300.8 205 70.7
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.4e-68 264.2 173 72.3
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.6e-64 250.0 223 60.5
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 1.6e-62 245.4 185 66.5
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 5.1e-56 223.8 153 73.2
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 3.2e-50 204.5 268 48.5
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 9.3e-50 203.0 131 77.1
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 7.1e-42 176.8 607 27.2
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.9e-40 171.0 166 60.2
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.8e-30 138.3 128 62.5
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 6.3e-30 137.1 122 67.2
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 2.4e-29 135.2 72 93.1
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.2e-28 132.9 128 54.7
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.6e-28 131.7 107 65.4
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 9.7e-23 113.2 67 83.6
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 7.2e-18 97.1 60 81.7
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 4.4e-15 87.8 75 64.0
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 6.3e-14 84.0 92 48.9
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.1e-13 81.3 94 56.4
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 2.6e-12 78.6 43 86.0
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.8e-08 65.9 61 54.1
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 5.2e-08 64.3 83 54.2
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 9.7e-07 60.1 44 70.5


User provided reference genes

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