Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 1.3e-162 576.2 281 100.0
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 7.9e-107 391.0 234 81.2
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 2.5e-105 386.0 204 87.7
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 9.7e-105 384.0 204 87.3
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 9.7e-105 384.0 204 87.3
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 4.8e-104 381.7 208 85.6
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.4e-103 379.4 206 85.4
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.5e-97 360.1 206 80.1
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 5.7e-97 358.2 207 79.2
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 1.3e-96 357.1 205 80.5
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 3.7e-96 355.5 208 79.3
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 3.1e-95 352.4 208 77.4
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 4.1e-95 352.1 208 76.4
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 6.9e-95 351.3 208 76.9
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 9.1e-95 350.9 206 79.1
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 1.2e-94 350.5 208 76.0
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 1.0e-93 347.4 208 76.0
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 1.7e-93 346.7 205 76.1
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 1.7e-93 346.7 204 77.9
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 2.9e-93 345.9 208 76.0
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 8.5e-93 344.4 203 77.3
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 5.5e-92 341.7 204 74.5
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 5.5e-92 341.7 204 74.5
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 4.7e-91 338.6 204 74.0
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 6.1e-91 338.2 208 75.0
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 7.9e-91 337.8 204 76.0
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 2.3e-90 336.3 203 77.3
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 3.9e-90 335.5 204 72.1
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 3.9e-90 335.5 234 66.7
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 8.8e-90 334.3 204 75.5
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 1.1e-89 334.0 203 75.9
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 4.4e-89 332.0 206 72.3
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 7.4e-89 331.3 208 72.6
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.3e-88 330.5 208 75.0
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 3.7e-88 328.9 251 62.9
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 1.1e-87 327.4 209 72.2
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 1.1e-87 327.4 205 72.2
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.4e-87 327.0 204 73.5
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 1.8e-87 326.6 204 74.0
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 3.1e-87 325.9 202 73.3
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 5.3e-87 325.1 209 72.7
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 2.0e-86 323.2 204 74.0
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 3.5e-86 322.4 202 72.3
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 2.2e-85 319.7 222 67.6
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 2.2e-85 319.7 222 67.6
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 6.5e-85 318.2 205 70.2
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 6.5e-85 318.2 204 70.1
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 1.1e-84 317.4 207 69.1
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 1.1e-84 317.4 207 69.1
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.1e-84 317.4 205 68.8
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.9e-84 316.6 216 64.4
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 6.1e-83 311.6 203 69.5
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 6.1e-83 311.6 203 68.5
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 6.1e-83 311.6 206 68.0
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 1.0e-82 310.8 207 66.7
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 1.4e-82 310.5 207 66.2
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.8e-82 310.1 188 75.5
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 3.0e-82 309.3 207 68.1
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 4.0e-82 308.9 207 66.2
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 6.7e-82 308.1 184 77.2
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 2.6e-81 306.2 205 65.4
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 3.3e-81 305.8 207 65.7
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 5.7e-81 305.1 205 64.4
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 1.3e-80 303.9 207 65.2
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 1.3e-80 303.9 207 65.2
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 1.3e-80 303.9 201 68.2
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 1.7e-80 303.5 205 64.4
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 2.8e-80 302.8 205 65.4
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 6.3e-80 301.6 205 63.9
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 6.3e-80 301.6 165 84.8
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 4.5e-78 295.4 204 66.2
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 7.7e-78 294.7 202 67.8
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 5.0e-77 292.0 213 65.3
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 5.0e-77 292.0 203 64.5
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 8.5e-77 291.2 204 65.7
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 1.5e-76 290.4 206 67.5
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 1.9e-76 290.0 206 67.0
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 2.7e-75 286.2 164 79.3
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 1.2e-73 280.8 183 69.9
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 5.7e-73 278.5 208 62.5
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.7e-72 276.9 178 70.2
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 2.2e-72 276.6 174 72.4
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.8e-72 276.2 223 60.1
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 7.0e-71 271.6 161 76.4
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 2.3e-69 266.5 184 64.7
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 6.8e-66 255.0 163 69.9
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 4.1e-63 245.7 145 75.9
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 7.0e-63 245.0 209 56.5
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 1.0e-61 241.1 187 59.9
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 4.3e-60 235.7 149 71.8
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 2.1e-59 233.4 161 65.8
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 6.1e-59 231.9 219 52.1
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.4e-58 230.7 217 51.2
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.4e-58 230.7 217 51.2
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 2.0e-57 226.9 146 71.2
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 6.4e-56 221.9 210 51.4
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.9e-52 210.3 122 76.2
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.6e-51 207.2 146 61.0
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 3.6e-51 206.1 148 63.5
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 2.3e-50 203.4 168 57.7
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 8.3e-48 194.9 214 46.3
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 8.3e-48 194.9 106 83.0
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 1.4e-47 194.1 106 83.0
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 1.6e-46 190.7 121 67.8
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 1.6e-38 164.1 162 48.8
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 9.5e-36 154.8 145 53.8
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 2.4e-31 140.2 168 42.3
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 2.1e-30 137.1 156 43.6
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.0e-29 134.8 105 62.9
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 8.1e-27 125.2 209 34.4
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 2.9e-24 116.7 277 27.8
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 1.9e-23 114.0 162 37.7
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 7.8e-22 108.6 145 40.0
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 3.1e-18 96.7 61 72.1
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 1.2e-17 94.7 59 74.6
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 7.1e-15 85.5 54 68.5


User provided reference genes

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