Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 2.2e-94 349.0 176 100.0
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 2.6e-79 298.9 176 86.4
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 4.5e-68 261.5 176 75.0
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.0e-44 183.0 189 56.6
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 1.0e-43 180.6 190 57.4
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.7e-43 179.9 189 56.6
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 5.0e-43 178.3 191 54.5
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.5e-42 176.8 191 53.9
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 4.0e-40 168.7 187 52.4
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 9.2e-29 131.0 180 42.8
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 1.1e-24 117.5 174 39.7
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 5.2e-24 115.2 189 36.5
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 5.2e-24 115.2 181 38.7
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.2e-23 114.0 184 39.1
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.5e-23 113.6 180 36.7
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 4.9e-22 108.6 137 46.7
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 5.4e-21 105.1 137 41.6
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 7.1e-21 104.8 182 40.7
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 1.6e-20 103.6 196 34.7
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 2.1e-20 103.2 178 38.8
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 2.1e-20 103.2 181 39.2
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 2.7e-20 102.8 189 38.6
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 4.6e-20 102.1 134 42.5
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 8.7e-19 97.8 176 36.9
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 8.7e-19 97.8 131 45.0
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 3.3e-18 95.9 141 37.6
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 4.3e-18 95.5 171 36.8
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 9.6e-18 94.4 128 45.3
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 2.8e-17 92.8 189 33.3
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 3.6e-17 92.4 128 45.3
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 4.8e-17 92.0 121 43.0
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 8.1e-17 91.3 172 35.5
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 1.1e-16 90.9 149 38.3
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 1.8e-16 90.1 182 34.1
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 3.1e-16 89.4 147 37.4
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 4.0e-16 89.0 166 36.7
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 9.0e-16 87.8 141 35.5
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 2.0e-15 86.7 144 37.5
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 2.6e-15 86.3 173 33.5
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 3.4e-15 85.9 101 44.6
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 3.4e-15 85.9 197 35.0
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 5.8e-15 85.1 176 34.1
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 9.9e-15 84.3 170 31.2
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 1.3e-14 84.0 156 34.0
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 1.3e-14 84.0 185 34.1
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 1.7e-14 83.6 173 34.1
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 2.2e-14 83.2 175 34.3
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 2.9e-14 82.8 146 36.3
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 2.9e-14 82.8 67 58.2
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 2.9e-14 82.8 195 29.7
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 2.9e-14 82.8 129 41.1
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.8e-14 82.4 176 33.5
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 3.8e-14 82.4 111 44.1
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 1.1e-13 80.9 176 31.2
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.1e-13 80.9 172 31.4
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.4e-13 80.5 190 31.6
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 1.9e-13 80.1 111 43.2
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 7.1e-13 78.2 162 31.5
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 1.2e-12 77.4 181 33.7
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 1.6e-12 77.0 144 33.3
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 2.7e-12 76.3 141 38.3
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.7e-12 76.3 129 37.2
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 3.5e-12 75.9 179 30.2
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 4.6e-12 75.5 192 30.7
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 6.0e-12 75.1 136 33.1
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 6.0e-12 75.1 65 50.8
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 7.9e-12 74.7 169 34.3
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 1.0e-11 74.3 140 37.1
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 1.0e-11 74.3 62 50.0
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 1.8e-11 73.6 133 33.1
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 1.8e-11 73.6 170 34.1
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 1.8e-11 73.6 160 33.8
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.8e-11 73.6 74 47.3
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 2.3e-11 73.2 89 38.2
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 3.0e-11 72.8 145 35.9
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 3.9e-11 72.4 68 44.1
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 3.9e-11 72.4 183 33.3
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 5.1e-11 72.0 177 33.3
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 5.1e-11 72.0 72 47.2
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 5.1e-11 72.0 68 44.1
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 6.7e-11 71.6 169 33.7
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 6.7e-11 71.6 62 46.8
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 8.7e-11 71.2 105 40.0
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 8.7e-11 71.2 169 31.4
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 8.7e-11 71.2 122 33.6
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 1.1e-10 70.9 169 33.1
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 1.1e-10 70.9 169 33.1
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 1.1e-10 70.9 187 33.7
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 1.5e-10 70.5 199 30.2
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 1.5e-10 70.5 175 29.7
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 1.9e-10 70.1 191 30.9
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 1.9e-10 70.1 71 49.3
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 1.9e-10 70.1 167 29.3
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.9e-10 70.1 93 41.9
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 5.6e-10 68.6 135 34.8
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 5.6e-10 68.6 191 31.4
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 5.6e-10 68.6 63 44.4
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 7.4e-10 68.2 74 41.9
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 7.4e-10 68.2 143 32.9
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 9.6e-10 67.8 191 30.4
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 9.6e-10 67.8 191 30.4
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 9.6e-10 67.8 184 29.3
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 9.6e-10 67.8 134 34.3
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 1.3e-09 67.4 139 36.0
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.6e-09 67.0 64 48.4
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 1.6e-09 67.0 105 38.1
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 1.6e-09 67.0 61 45.9
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 2.1e-09 66.6 192 30.7
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 4.8e-09 65.5 64 43.8
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 4.8e-09 65.5 65 43.1
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 8.1e-09 64.7 166 30.7
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 8.1e-09 64.7 60 45.0
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 8.1e-09 64.7 60 45.0
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 8.1e-09 64.7 105 34.3
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 1.1e-08 64.3 166 30.1
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.1e-08 64.3 167 31.7
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 1.1e-08 64.3 177 27.7
QL04p052194 Quercus lobata HOM05D007511 ORTHO05D003753 1.1e-08 64.3 142 38.0
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 1.4e-08 63.9 65 41.5
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 1.8e-08 63.5 73 41.1
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 1.8e-08 63.5 73 41.1
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 1.8e-08 63.5 73 41.1
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 1.8e-08 63.5 73 41.1
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 1.8e-08 63.5 87 34.5
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 1.8e-08 63.5 108 34.3
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.8e-08 63.5 63 47.6
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 3.1e-08 62.8 102 34.3
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 3.1e-08 62.8 73 41.1
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 3.1e-08 62.8 194 28.9
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 3.1e-08 62.8 62 43.5
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 4.0e-08 62.4 195 28.7
Migut.N01683 Erythranthe guttata HOM05D007511 ORTHO05D003753 4.0e-08 62.4 66 45.5
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 4.0e-08 62.4 129 32.6
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 5.3e-08 62.0 60 45.0
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 5.3e-08 62.0 60 43.3
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 6.9e-08 61.6 177 29.9
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 6.9e-08 61.6 60 41.7
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 9.0e-08 61.2 60 41.7
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 9.0e-08 61.2 62 41.9
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 9.0e-08 61.2 183 27.3
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.2e-07 60.8 167 29.3
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 1.2e-07 60.8 98 34.7
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 1.2e-07 60.8 98 34.7
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.5e-07 60.5 206 27.7
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.5e-07 60.5 66 34.8
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.0e-07 60.1 115 32.2
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 2.6e-07 59.7 202 27.7
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 2.6e-07 59.7 102 36.3
Aqoxy6G00297 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 3.4e-07 59.3 139 35.3
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 4.5e-07 58.9 193 28.5
CAN.G992.2 Capsicum annuum HOM05D007511 ORTHO05D003753 7.6e-07 58.2 52 50.0
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 7.6e-07 58.2 169 27.8
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 7.6e-07 58.2 115 28.7
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 7.6e-07 58.2 61 45.9
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 7.6e-07 58.2 55 49.1
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 9.9e-07 57.8 170 27.6
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 1.7e-06 57.0 172 26.2
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.2e-06 56.6 178 28.7
SalBow4G0080 Salvia bowleyana HOM05D007511 ORTHO05D003753 2.2e-06 56.6 67 37.3
SalBow4G2364 Salvia bowleyana HOM05D007511 ORTHO05D003753 2.2e-06 56.6 67 37.3
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 2.9e-06 56.2 178 28.1
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 2.9e-06 56.2 114 29.8
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 3.8e-06 55.8 88 31.8
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 3.8e-06 55.8 53 39.6
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 4.9e-06 55.5 169 27.8
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 8.4e-06 54.7 173 30.1


User provided reference genes

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