Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1227800 Malus domestica HOM05D005010 ORTHO05D006065 2.8e-76 288.5 142 100.0
Prupe.2G112100 Prunus persica HOM05D005010 ORTHO05D006065 3.8e-57 224.9 124 87.9
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 1.3e-52 209.9 124 82.3
RcHm_v2.0_Chr1g0343231 Rosa chinensis HOM05D005010 ORTHO05D006065 1.6e-52 209.5 124 83.9
FAN06G0276 Fragaria x ananassa HOM05D005010 ORTHO05D006065 2.1e-47 192.6 124 79.0
RcHm_v2.0_Chr2g0122991 Rosa chinensis HOM05D005010 ORTHO05D006065 7.9e-47 190.7 124 77.4
FvH4_7g08470 Fragaria vesca HOM05D005010 ORTHO05D006065 1.8e-46 189.5 124 78.2
FAN01G2345 Fragaria x ananassa HOM05D005010 ORTHO05D006065 8.8e-46 187.2 124 77.4
FAN03G3376 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.3e-45 185.3 124 75.8
FAN03G2591 Fragaria x ananassa HOM05D005010 ORTHO05D006065 2.8e-44 182.2 124 74.2
FAN19G0035 Fragaria x ananassa HOM05D005010 ORTHO05D006065 4.8e-44 181.4 124 73.4
FAN03G3310 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.8e-43 179.5 124 73.4
FvH4_1g22161 Fragaria vesca HOM05D005010 ORTHO05D006065 5.3e-43 177.9 124 72.6
FAN28G0697 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.3e-43 177.9 124 73.4
FAN26G0391 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.4e-42 175.3 124 71.8
Cfa003937 Carpinus fangiana HOM05D005010 ORTHO05D006065 5.2e-38 161.4 134 64.9
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 2.0e-37 159.5 134 64.2
Thecc.01G360400 Theobroma cacao HOM05D005010 ORTHO05D006065 4.4e-37 158.3 132 62.9
QL08p049016 Quercus lobata HOM05D005010 ORTHO05D006065 4.8e-36 154.8 134 63.4
Duzib138G0257 Durio zibethinus HOM05D005010 ORTHO05D006065 6.3e-36 154.5 130 62.3
TAR629G2224 Trochodendron aralioides HOM05D005010 ORTHO05D006065 9.1e-35 150.6 132 58.3
Actinidia20915 Actinidia chinensis HOM05D005010 ORTHO05D006065 5.9e-34 147.9 128 60.9
Cpa.g.c27491.2 Carica papaya HOM05D005010 ORTHO05D006065 5.9e-34 147.9 131 58.8
Sabra14G0060200 Salix brachista HOM05D005010 ORTHO05D006065 5.9e-34 147.9 135 57.8
Actinidia10021 Actinidia chinensis HOM05D005010 ORTHO05D006065 1.7e-33 146.4 131 62.6
TAR629G1525 Trochodendron aralioides HOM05D005010 ORTHO05D006065 3.8e-33 145.2 133 60.2
Manes.05G035400 Manihot esculenta HOM05D005010 ORTHO05D006065 5.0e-33 144.8 135 59.3
Dinv32470 Davidia involucrata HOM05D005010 ORTHO05D006065 6.5e-33 144.4 132 59.1
Ciclev10020258m.g Citrus clementina HOM05D005010 ORTHO05D006065 5.5e-32 141.4 127 57.5
Gohir.A08G032600 Gossypium hirsutum HOM05D005010 ORTHO05D006065 8.0e-31 137.5 132 56.8
Gorai.004G042100 Gossypium raimondii HOM05D005010 ORTHO05D006065 8.0e-31 137.5 132 56.8
Duzib268G0644 Durio zibethinus HOM05D005010 ORTHO05D006065 1.8e-30 136.3 126 61.1
vmacro13278 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 6.7e-30 134.4 132 56.8
Potri.002G158800 Populus trichocarpa HOM05D005010 ORTHO05D006065 1.2e-29 133.7 135 57.0
ECA234G3587 Erigeron canadensis HOM05D005010 ORTHO05D006065 1.5e-29 133.3 93 68.8
SalBow6G7245 Salvia bowleyana HOM05D005010 ORTHO05D006065 1.5e-29 133.3 124 54.8
Lsat_1_v5_gn_4_36200 Lactuca sativa HOM05D005010 ORTHO05D006065 5.7e-29 131.3 137 51.8
Aqoxy7G00336 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 9.7e-29 130.6 130 54.6
Nn2g11699 Nelumbo nucifera HOM05D005010 ORTHO05D006065 1.7e-28 129.8 135 52.6
SalBow1G2229 Salvia bowleyana HOM05D005010 ORTHO05D006065 1.7e-28 129.8 124 54.0
Migut.B01743 Erythranthe guttata HOM05D005010 ORTHO05D006065 2.8e-28 129.0 94 64.9
Lj9C582G27 Lonicera japonica HOM05D005010 ORTHO05D006065 2.8e-28 129.0 88 70.5
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 4.8e-28 128.3 128 55.5
Rhsim07G0016300 Rhododendron simsii HOM05D005010 ORTHO05D006065 6.3e-28 127.9 124 54.8
Rhsim11G0072000 Rhododendron simsii HOM05D005010 ORTHO05D006065 6.3e-28 127.9 124 54.8
MSTRG.17259 Avicennia marina HOM05D005010 ORTHO05D006065 1.1e-27 127.1 99 61.6
CSS0029232 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 1.1e-27 127.1 134 53.7
HanXRQChr16g0522801 Helianthus annuus HOM05D005010 ORTHO05D006065 1.4e-27 126.7 139 51.1
CSS0001208 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 2.4e-27 125.9 134 53.7
CANSAT21G0157 Cannabis sativa HOM05D005010 ORTHO05D006065 2.4e-27 125.9 128 58.6
Eucgr.D02284 Eucalyptus grandis HOM05D005010 ORTHO05D006065 3.1e-27 125.6 132 54.5
EL10Ac1g00427 Beta vulgaris HOM05D005010 ORTHO05D006065 1.2e-26 123.6 94 59.6
BcaC01g00732 Brassica carinata HOM05D005010 ORTHO05D006065 5.9e-26 121.3 130 53.1
BolC3t20645H Brassica oleracea HOM05D005010 ORTHO05D006065 5.9e-26 121.3 130 53.1
Peaxi162Scf00020g00235 Petunia axillaris HOM05D005010 ORTHO05D006065 7.7e-26 120.9 68 82.4
Cc02_g37880 Coffea canephora HOM05D005010 ORTHO05D006065 1.0e-25 120.6 132 50.8
SGA_v2.0_scaffold4G02331 Striga asiatica HOM05D005010 ORTHO05D006065 1.0e-25 120.6 129 51.9
Hund16928 Selenicereus undatus HOM05D005010 ORTHO05D006065 1.3e-25 120.2 150 46.7
C03p83660 Brassica napus HOM05D005010 ORTHO05D006065 1.7e-25 119.8 130 52.3
ATR0680G350 Amborella trichopoda HOM05D005010 ORTHO05D006065 2.2e-25 119.4 85 67.1
Thhalv10025283m.g Eutrema salsugineum HOM05D005010 ORTHO05D006065 3.8e-25 118.6 120 56.7
BcaB03g11707 Brassica carinata HOM05D005010 ORTHO05D006065 6.5e-25 117.9 128 51.6
BcaC01g00726 Brassica carinata HOM05D005010 ORTHO05D006065 6.5e-25 117.9 128 51.6
Glyma.07G071800 Glycine max HOM05D005010 ORTHO05D006065 6.5e-25 117.9 130 53.1
CiPaw.01G060000 Carya illinoinensis HOM05D005010 ORTHO05D006065 8.5e-25 117.5 55 92.7
MBI18_g42176_MAGBIO Magnolia biondii HOM05D005010 ORTHO05D006065 8.5e-25 117.5 85 67.1
Atru.chr5.463 Acer truncatum HOM05D005010 ORTHO05D006065 1.1e-24 117.1 79 72.2
CAN.G78.54 Capsicum annuum HOM05D005010 ORTHO05D006065 1.1e-24 117.1 87 64.4
arahy.Tifrunner.gnm1.ann1.23H0YW Arachis hypogaea HOM05D005010 ORTHO05D006065 1.5e-24 116.7 139 50.4
PSO782G1000 Papaver somniferum HOM05D005010 ORTHO05D006065 1.5e-24 116.7 91 58.2
A08p15390 Brassica napus HOM05D005010 ORTHO05D006065 7.2e-24 114.4 130 50.8
BraA08t33517Z Brassica rapa HOM05D005010 ORTHO05D006065 7.2e-24 114.4 130 50.8
arahy.Tifrunner.gnm1.ann1.MH5UBF Arachis hypogaea HOM05D005010 ORTHO05D006065 1.2e-23 113.6 139 49.6
TWI14G0418 Tripterygium wilfordii HOM05D005010 ORTHO05D006065 1.6e-23 113.2 92 63.0
COL.COLO4_12702 Corchorus olitorius HOM05D005010 ORTHO05D006065 2.1e-23 112.8 57 80.7
AT4G20960 Arabidopsis thaliana HOM05D005010 ORTHO05D006065 3.6e-23 112.1 124 51.6
Oeu058611.3 Olea europaea HOM05D005010 ORTHO05D006065 3.6e-23 112.1 60 81.7
Glyma.03G010700 Glycine max HOM05D005010 ORTHO05D006065 6.1e-23 111.3 118 57.6
Lalb_Chr17g0339751 Lupinus albus HOM05D005010 ORTHO05D006065 6.1e-23 111.3 126 52.4
PGSC0003DMG400000164 Solanum tuberosum HOM05D005010 ORTHO05D006065 6.1e-23 111.3 67 76.1
Oeu034880.2 Olea europaea HOM05D005010 ORTHO05D006065 8.0e-23 110.9 60 80.0
arahy.Tifrunner.gnm1.ann1.L7E1K8 Arachis hypogaea HOM05D005010 ORTHO05D006065 1.0e-22 110.5 143 52.4
Solyc01g094500.3 Solanum lycopersicum HOM05D005010 ORTHO05D006065 1.0e-22 110.5 67 76.1
Sopen01g038310 Solanum pennellii HOM05D005010 ORTHO05D006065 1.0e-22 110.5 67 76.1
arahy.Tifrunner.gnm1.ann1.99Z3M1 Arachis hypogaea HOM05D005010 ORTHO05D006065 1.4e-22 110.2 147 50.3
Sc23g0002970 Simmondsia chinensis HOM05D005010 ORTHO05D006065 1.4e-22 110.2 67 73.1
vmacro14577 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 1.4e-22 110.2 128 52.3
AUR62004345 Chenopodium quinoa HOM05D005010 ORTHO05D006065 2.3e-22 109.4 138 49.3
AL7G33190 Arabidopsis lyrata HOM05D005010 ORTHO05D006065 3.0e-22 109.0 123 51.2
Nitab4.5_0007225g0010 Nicotiana tabacum HOM05D005010 ORTHO05D006065 3.0e-22 109.0 79 67.1
THA.LOC104812937 Tarenaya hassleriana HOM05D005010 ORTHO05D006065 4.0e-22 108.6 133 49.6
HPP92_014015 Vanilla planifolia HOM05D005010 ORTHO05D006065 4.0e-22 108.6 52 92.3
Lj4g0008215 Lotus japonicus HOM05D005010 ORTHO05D006065 8.8e-22 107.5 113 51.3
Sp7g19030 Schrenkiella parvula HOM05D005010 ORTHO05D006065 8.8e-22 107.5 132 47.0
unitig_749.g13796 Utricularia gibba HOM05D005010 ORTHO05D006065 1.2e-21 107.1 68 67.6
Aa31LG6G3020 Aethionema arabicum HOM05D005010 ORTHO05D006065 4.4e-21 105.1 133 46.6
Carub.0007s2048 Capsella rubella HOM05D005010 ORTHO05D006065 4.4e-21 105.1 104 51.9
BcaB06g27372 Brassica carinata HOM05D005010 ORTHO05D006065 5.7e-21 104.8 92 60.9
Zm00001eb001180 Zea mays HOM05D005010 ORTHO05D006065 9.8e-21 104.0 61 77.0
TPR.G14634 Trifolium pratense HOM05D005010 ORTHO05D006065 1.3e-20 103.6 63 71.4
CARHR227510 Cardamine hirsuta HOM05D005010 ORTHO05D006065 1.7e-20 103.2 128 49.2
AUR62022551 Chenopodium quinoa HOM05D005010 ORTHO05D006065 1.7e-20 103.2 146 47.3
Os03g0117200 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 3.7e-20 102.1 71 71.8
Phvul.010G097500 Phaseolus vulgaris HOM05D005010 ORTHO05D006065 3.7e-20 102.1 63 73.0
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 3.7e-20 102.1 58 77.6
Ah.05g180680 Amaranthus hybridus HOM05D005010 ORTHO05D006065 6.3e-20 101.3 108 49.1
GSVIVG01026897001 Vitis vinifera HOM05D005010 ORTHO05D006065 8.3e-20 100.9 47 95.7
DCAR_006924 Daucus carota HOM05D005010 ORTHO05D006065 1.8e-19 99.8 75 60.0
Psat4g028280 Pisum sativum HOM05D005010 ORTHO05D006065 1.8e-19 99.8 56 75.0
CsaV3_6G000480 Cucumis sativus L. HOM05D005010 ORTHO05D006065 3.1e-19 99.0 96 58.3
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 4.1e-19 98.6 96 57.3
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 7.0e-19 97.8 59 69.5
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 1.2e-18 97.1 97 54.6
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 1.2e-18 97.1 55 74.5
Sed0013033 Sechium edule HOM05D005010 ORTHO05D006065 1.6e-18 96.7 90 57.8
Eucgr.D00187 Eucalyptus grandis HOM05D005010 ORTHO05D006065 2.0e-18 96.3 47 89.4
Nitab4.5_0007690g0020 Nicotiana tabacum HOM05D005010 ORTHO05D006065 2.0e-18 96.3 67 65.7
SEGI_16261 Sequoiadendron giganteum HOM05D005010 ORTHO05D006065 2.0e-18 96.3 71 64.8
BraA03t14331Z Brassica rapa HOM05D005010 ORTHO05D006065 3.5e-18 95.5 46 87.0
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 3.5e-18 95.5 51 78.4
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 5.9e-18 94.7 122 49.2
Os04g0177400 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 1.0e-17 94.0 52 78.8
HPP92_013926 Vanilla planifolia HOM05D005010 ORTHO05D006065 2.9e-17 92.4 55 76.4
HPP92_014013 Vanilla planifolia HOM05D005010 ORTHO05D006065 6.5e-17 91.3 55 74.5
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 8.6e-17 90.9 51 78.4
BcaNung05416 Brassica carinata HOM05D005010 ORTHO05D006065 1.1e-16 90.5 47 80.9
BolC7t45602H Brassica oleracea HOM05D005010 ORTHO05D006065 1.1e-16 90.5 47 80.9
Potri.014G083000 Populus trichocarpa HOM05D005010 ORTHO05D006065 1.9e-16 89.7 81 58.0
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 2.5e-16 89.4 52 71.2
C07p51010 Brassica napus HOM05D005010 ORTHO05D006065 5.5e-16 88.2 47 78.7
Ciclev10013015m.g Citrus clementina HOM05D005010 ORTHO05D006065 1.2e-15 87.0 43 88.4
Lalb_Chr04g0256911 Lupinus albus HOM05D005010 ORTHO05D006065 3.6e-15 85.5 54 68.5
A03p52560 Brassica napus HOM05D005010 ORTHO05D006065 6.1e-15 84.7 44 81.8
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 8.0e-15 84.3 53 69.8
PRCOL_00002917 Prasinoderma coloniale HOM05D005010 ORTHO05D006065 1.1e-11 73.9 53 64.2
MCO15G184 Micromonas commoda HOM05D005010 ORTHO05D006065 1.4e-11 73.6 66 57.6
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.6e-10 70.1 64 53.1
Aqoxy3G02565 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 3.6e-07 58.9 28 92.9
Ah.09g225570 Amaranthus hybridus HOM05D005010 ORTHO05D006065 1.0e-06 57.4 38 68.4
RcHm_v2.0_Chr0c20g0500231 Rosa chinensis HOM05D005010 ORTHO05D006065 6.8e-06 54.7 28 82.1
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 6.8e-06 54.7 51 51.0


User provided reference genes

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