Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 3.3e-86 321.6 159 100.0
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-84 315.8 159 97.5
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 9.7e-78 293.5 151 95.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.4e-76 289.7 160 91.2
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.2e-74 282.3 160 88.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 5.0e-74 281.2 160 88.1
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.9e-73 279.3 160 88.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 5.5e-73 277.7 160 86.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.5e-73 277.7 160 86.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.4e-73 276.9 160 86.2
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 3.6e-64 248.4 163 75.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.0e-63 245.4 163 77.3
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 4.0e-63 245.0 162 74.7
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 8.8e-63 243.8 163 76.7
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 2.0e-62 242.7 163 74.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 7.5e-62 240.7 163 74.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.7e-61 239.6 163 71.8
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.2e-61 239.2 162 74.7
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 4.9e-61 238.0 163 73.6
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.1e-60 236.9 163 70.6
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.4e-60 235.7 164 72.6
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 3.1e-60 235.3 163 71.8
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.2e-59 233.4 162 72.8
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.0e-59 232.6 163 73.0
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.0e-59 232.6 163 73.0
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.5e-59 231.9 163 73.6
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.5e-59 231.9 163 73.6
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 4.5e-59 231.5 163 69.9
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.5e-59 231.5 162 72.2
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.3e-58 229.9 164 72.6
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.7e-58 229.6 163 68.7
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.3e-58 229.2 163 71.8
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.3e-58 229.2 164 73.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.9e-58 228.8 160 72.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 2.9e-58 228.8 162 71.0
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.9e-58 228.8 164 73.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.8e-58 228.4 163 72.4
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 3.8e-58 228.4 164 70.1
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 5.0e-58 228.0 162 70.4
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 6.6e-58 227.6 163 69.9
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 8.6e-58 227.3 163 73.0
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.1e-57 226.9 163 69.3
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.5e-57 226.5 162 70.4
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.9e-57 226.1 162 69.8
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.9e-57 226.1 162 70.4
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.5e-57 225.7 163 71.8
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 4.2e-57 224.9 160 73.1
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 9.5e-57 223.8 160 71.9
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 9.5e-57 223.8 158 71.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 9.5e-57 223.8 163 69.3
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.1e-56 222.6 163 69.9
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.8e-56 222.2 164 68.3
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 4.7e-56 221.5 165 68.5
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 6.1e-56 221.1 164 68.9
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 8.0e-56 220.7 163 67.5
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 8.0e-56 220.7 162 68.5
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.0e-55 220.3 161 69.6
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.8e-55 219.5 167 67.7
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.0e-55 218.8 163 69.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.0e-55 218.8 163 69.3
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.0e-55 218.4 163 69.3
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.4e-54 214.9 153 71.2
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 5.7e-54 214.5 162 67.3
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 7.5e-54 214.2 164 67.1
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.8e-54 213.8 164 63.4
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 8.3e-53 210.7 162 65.4
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.1e-52 210.3 170 64.7
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.8e-52 209.5 164 64.6
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.4e-52 209.1 163 64.4
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.1e-52 208.4 163 62.6
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.4e-52 208.0 163 62.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 9.2e-52 207.2 163 66.3
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.6e-51 206.5 162 65.4
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.7e-51 205.7 164 62.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.9e-51 204.5 164 62.2
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 7.8e-51 204.1 165 64.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.7e-50 203.0 162 64.2
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 2.9e-50 202.2 163 64.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 6.6e-50 201.1 169 59.8
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.9e-49 199.5 162 62.3
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.9e-49 199.5 164 61.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.5e-49 199.1 165 62.4
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.6e-49 198.0 165 61.8
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 7.3e-49 197.6 165 60.6
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 9.5e-49 197.2 164 61.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.6e-48 196.4 163 60.7
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.2e-48 194.5 165 60.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.0e-48 194.1 165 60.6
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.4e-47 193.4 165 60.0
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.3e-47 192.6 168 58.9
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 4.0e-47 191.8 165 59.4
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.2e-46 190.3 167 58.1
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-46 189.5 166 59.0
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.6e-46 189.1 165 61.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.6e-46 189.1 155 61.3
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.7e-45 186.4 163 57.1
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.2e-45 186.0 157 61.8
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.2e-45 186.0 131 69.5
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 6.4e-45 184.5 167 57.5
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 8.3e-45 184.1 166 58.4
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 8.3e-45 184.1 166 58.4
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-44 183.7 166 58.4
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.9e-44 183.0 165 58.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 2.4e-44 182.6 121 76.9
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.4e-44 182.6 163 62.0
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.1e-44 181.8 161 62.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.4e-44 181.4 166 56.6
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 5.4e-44 181.4 166 56.6
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.0e-42 175.6 123 69.1
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-41 173.3 165 55.2
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.9e-41 172.9 125 68.8
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 7.3e-41 171.0 158 53.8
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 4.7e-40 168.3 135 64.4
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 3.1e-39 165.6 165 54.5
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 3.1e-39 165.6 165 54.5
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.6e-38 162.5 157 56.1
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 9.8e-38 160.6 123 61.8
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.4e-36 156.0 159 53.5
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.2e-36 155.6 128 62.5
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.3e-34 150.2 156 46.8
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 8.6e-34 147.5 164 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.5e-33 146.0 159 49.7
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.3e-33 145.6 157 49.7
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.2e-32 143.7 120 61.7
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.7e-32 141.7 165 51.5
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 6.2e-32 141.4 124 58.9
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-31 140.6 165 50.9
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.8e-31 139.8 114 57.9
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.3e-31 139.4 151 51.0
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.1e-31 139.0 165 50.9
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 8.9e-31 137.5 111 60.4
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-30 137.1 169 48.5
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.2e-30 137.1 122 52.5
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 4.4e-30 135.2 96 62.5
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-29 133.7 119 56.3
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.3e-26 122.9 120 47.5
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 3.0e-26 122.5 121 47.9
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.1e-25 120.6 169 46.2
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.5e-25 120.2 89 67.4
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.6e-24 116.7 133 44.4
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.4e-23 112.8 80 68.8
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 4.9e-21 105.1 145 41.4
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 4.9e-21 105.1 76 67.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 6.6e-18 94.7 63 65.1
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.3e-17 91.3 162 39.5
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 9.0e-15 84.3 68 69.1
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-14 83.6 61 72.1
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.6e-14 82.8 82 53.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.4e-14 82.0 57 75.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.4e-14 82.0 57 75.4
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.3e-13 80.5 63 52.4
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.2e-13 79.7 61 72.1
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.8e-13 79.0 66 68.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 6.4e-13 78.2 76 46.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.4e-12 77.0 81 53.1
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.1e-11 73.2 53 71.7
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.0e-11 71.6 84 52.4
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.0e-10 70.9 115 36.5
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.6e-10 68.2 64 59.4
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.5e-09 67.0 62 59.7
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.5e-09 67.0 121 33.9
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.3e-09 65.9 63 44.4
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 4.8e-08 62.0 65 41.5
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.4e-07 60.5 63 55.6
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 1.2e-06 57.4 102 32.4
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 2.0e-06 56.6 114 35.1


User provided reference genes

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