Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.5e-147 526.2 270 100.0
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 4.3e-134 481.5 268 91.4
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.0e-119 432.2 283 78.4
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.5e-118 429.1 272 80.9
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.0e-116 421.8 273 80.2
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.9e-116 421.0 273 79.9
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 3.8e-114 415.2 267 77.9
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.9e-114 414.8 273 79.1
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.1e-112 409.5 273 78.0
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.0e-111 407.1 273 75.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.3e-111 406.0 245 82.9
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 5.6e-110 401.4 269 77.0
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 7.3e-110 401.0 273 75.8
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.3e-109 400.2 271 75.6
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.8e-109 399.1 267 76.0
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.1e-108 397.1 271 76.4
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.1e-108 397.1 267 76.0
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.2e-107 393.7 268 74.6
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.6e-107 392.5 268 76.1
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.6e-107 392.5 267 74.9
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.4e-107 392.1 283 74.2
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 3.4e-107 392.1 268 73.5
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 9.9e-107 390.6 257 75.9
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.7e-106 389.8 267 74.9
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.9e-106 389.0 269 75.1
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.1e-105 387.1 270 73.7
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.1e-105 387.1 267 74.5
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.4e-105 386.0 268 76.1
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 4.2e-105 385.2 267 73.4
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.2e-105 385.2 267 73.8
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.2e-104 383.6 268 72.0
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.0e-103 380.6 267 71.2
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.3e-103 379.4 267 73.4
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 3.0e-103 379.0 270 71.5
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 5.1e-103 378.3 268 71.3
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 6.7e-103 377.9 267 72.3
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.9e-102 376.3 277 72.2
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.3e-102 375.2 262 71.4
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 4.3e-102 375.2 267 69.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 7.4e-102 374.4 267 69.7
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.3e-101 373.6 270 70.4
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.6e-101 373.2 270 69.3
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.1e-101 372.9 270 70.0
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.8e-101 372.5 270 69.3
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.8e-101 372.5 266 69.9
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.8e-101 372.5 270 69.6
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 4.8e-101 371.7 267 70.8
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 8.1e-101 370.9 267 70.4
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 8.1e-101 370.9 270 68.9
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.4e-100 369.4 272 69.1
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 5.3e-100 368.2 270 67.8
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 5.3e-100 368.2 270 69.3
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 5.8e-99 364.8 266 68.4
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.7e-98 363.2 268 69.0
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.2e-98 362.8 265 69.1
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 4.2e-97 358.6 268 69.0
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 5.5e-97 358.2 302 62.3
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 2.7e-96 355.9 270 68.5
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.7e-96 355.9 264 68.2
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.3e-95 352.8 267 67.8
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 5.1e-95 351.7 270 68.1
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.9e-94 349.7 269 67.3
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 5.7e-94 348.2 262 68.7
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 5.7e-94 348.2 260 67.7
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 6.2e-93 344.7 267 65.5
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.1e-92 344.0 246 70.7
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.8e-92 343.2 335 56.4
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.4e-92 342.8 264 66.3
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 2.4e-92 342.8 270 67.4
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.1e-92 342.0 268 65.7
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 9.0e-92 340.9 267 65.9
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.6e-91 339.3 267 65.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 5.8e-91 338.2 257 67.3
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.9e-90 335.9 269 64.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 8.4e-90 334.3 271 64.2
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 8.4e-90 334.3 267 66.7
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.1e-89 334.0 269 64.3
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 7.1e-89 331.3 268 64.2
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 7.1e-89 331.3 269 64.3
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.6e-88 330.1 267 63.7
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.0e-87 327.4 267 63.7
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 3.9e-87 325.5 267 63.3
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 3.3e-86 322.4 260 61.9
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.7e-85 318.9 268 62.7
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.9e-83 311.6 216 70.4
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 6.5e-82 308.1 245 64.1
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.1e-78 297.4 254 61.4
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 3.3e-78 295.8 269 59.9
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 3.7e-77 292.4 269 60.2
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.5e-75 287.0 191 75.9
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.0e-75 286.6 268 55.6
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.6e-72 276.9 267 55.8
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.3e-71 273.1 284 53.5
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.0e-70 270.0 188 69.1
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.3e-69 267.3 262 53.4
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.0e-66 257.7 178 70.8
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 7.2e-65 251.5 265 52.1
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.1e-62 244.2 245 55.5
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 5.3e-60 235.3 246 53.7
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.9e-57 226.9 212 59.9
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.2e-56 224.2 262 46.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.8e-55 220.3 340 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 1.2e-51 207.6 263 41.1
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.2e-51 207.6 259 42.1
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 5.2e-47 192.2 137 66.4
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 8.8e-47 191.4 226 45.6
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-46 191.0 151 69.5
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 3.6e-40 169.5 112 80.4
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 7.5e-38 161.8 140 59.3
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-37 159.5 112 77.7
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-37 159.5 112 77.7
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.0e-36 155.2 129 59.7
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.9e-34 149.4 105 71.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 3.3e-33 146.4 84 84.5
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 3.3e-33 146.4 160 52.5
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 7.3e-33 145.2 146 57.5
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 3.7e-29 132.9 84 76.2
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 6.0e-27 125.6 264 32.6
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 6.6e-26 122.1 112 59.8
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.5e-25 120.9 90 70.0
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.2e-24 117.9 249 29.3
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.2e-24 117.9 107 61.7
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.6e-22 110.2 109 57.8
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.3e-21 107.8 74 74.3
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.1e-20 104.8 71 70.4
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.9e-20 104.0 74 73.0
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-19 101.3 56 83.9
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.7e-18 97.4 116 51.7
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-17 94.0 55 87.3
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.5e-17 93.6 80 61.2
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 5.6e-17 92.4 103 56.3
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.6e-16 90.9 69 59.4
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-11 74.7 56 64.3
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.3e-10 71.2 89 50.6
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.5e-09 67.8 97 38.1
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 5.2e-07 59.3 59 54.2


User provided reference genes

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