Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 1.6e-35 152.1 72 100.0
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 2.6e-22 108.2 72 73.6
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 8.2e-16 86.7 44 88.6
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 1.1e-15 86.3 44 88.6
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 1.4e-15 85.9 44 88.6
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 1.8e-15 85.5 44 86.4
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 1.8e-15 85.5 44 86.4
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 1.8e-15 85.5 44 86.4
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 1.8e-15 85.5 44 86.4
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 4.1e-15 84.3 44 86.4
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 5.3e-15 84.0 44 86.4
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 5.3e-15 84.0 44 86.4
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 5.3e-15 84.0 44 86.4
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 6.9e-15 83.6 44 86.4
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 6.9e-15 83.6 44 86.4
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 6.9e-15 83.6 44 86.4
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 9.0e-15 83.2 44 84.1
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 1.2e-14 82.8 44 81.8
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 2.0e-14 82.0 44 84.1
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 2.6e-14 81.6 44 81.8
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 2.6e-14 81.6 44 81.8
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.7e-14 80.1 41 87.8
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.0e-13 79.7 44 81.8
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 2.2e-13 78.6 44 79.5
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 2.9e-13 78.2 44 81.8
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 5.0e-13 77.4 44 79.5
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 3.2e-12 74.7 44 77.3
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 1.2e-11 72.8 44 75.0
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 1.2e-11 72.8 44 75.0
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.4e-10 69.3 44 75.0
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 1.8e-10 68.9 52 69.2
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 3.0e-10 68.2 42 81.0
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.3e-07 57.4 46 65.2
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 2.6e-06 55.1 30 76.7
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 3.4e-06 54.7 28 85.7
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.7e-06 53.5 34 76.5


User provided reference genes

Program Settings