Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 8.8e-125 450.3 225 100.0
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.6e-97 359.8 225 83.1
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-95 353.6 227 80.6
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.3e-95 352.1 227 80.2
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 7.3e-95 350.9 227 79.7
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.8e-94 349.0 227 78.0
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.0e-93 347.1 227 80.2
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 9.5e-87 323.9 225 73.8
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 5.2e-85 318.2 228 71.9
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.3e-83 313.5 217 72.4
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.7e-83 312.0 225 72.4
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 4.9e-83 311.6 227 72.2
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 8.3e-83 310.8 225 72.4
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 8.3e-83 310.8 220 72.3
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.9e-82 309.7 225 70.2
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.2e-81 307.0 223 72.2
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 3.5e-81 305.4 219 70.8
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 6.0e-81 304.7 231 71.4
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 5.1e-80 301.6 186 79.0
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.5e-79 300.1 186 76.9
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.5e-79 300.1 186 78.5
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 5.6e-79 298.1 219 69.9
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 7.3e-79 297.7 224 67.0
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 8.1e-78 294.3 223 67.7
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.4e-77 293.5 219 67.1
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 3.1e-77 292.4 231 65.4
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 3.1e-77 292.4 226 67.3
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 5.2e-77 291.6 221 68.8
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.5e-76 290.0 221 66.5
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 4.4e-76 288.5 226 65.5
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 9.9e-76 287.3 226 64.6
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 9.9e-76 287.3 230 64.8
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 9.9e-76 287.3 231 65.4
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.3e-75 287.0 221 66.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.7e-75 286.6 187 75.4
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 3.7e-75 285.4 176 78.4
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 8.4e-75 284.3 219 66.7
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.1e-74 283.9 227 66.5
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.4e-74 282.7 226 67.7
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 2.4e-74 282.7 219 66.7
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 4.1e-74 282.0 229 65.5
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 5.4e-74 281.6 204 71.6
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 7.1e-74 281.2 231 65.8
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.2e-73 280.4 186 72.6
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.2e-73 280.4 232 64.7
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 2.1e-73 279.6 184 75.5
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 2.1e-73 279.6 223 65.5
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.7e-73 279.3 184 75.5
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 4.6e-73 278.5 225 64.9
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 6.0e-73 278.1 226 65.5
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 7.8e-73 277.7 230 63.9
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.0e-72 277.3 228 65.4
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 1.0e-72 277.3 219 65.3
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.3e-72 276.2 229 63.8
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 3.0e-72 275.8 225 65.8
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 3.9e-72 275.4 225 65.8
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 5.1e-72 275.0 230 63.0
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 5.1e-72 275.0 229 62.9
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 6.6e-72 274.6 232 61.6
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.6e-72 274.6 151 87.4
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 6.6e-72 274.6 225 64.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 8.6e-72 274.2 228 66.7
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.5e-71 273.5 230 64.3
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 1.9e-71 273.1 206 70.9
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.9e-71 273.1 230 62.6
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.5e-71 272.7 182 74.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 3.3e-71 272.3 225 65.8
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 9.6e-71 270.8 201 66.7
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 2.8e-70 269.2 227 63.4
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 3.6e-70 268.9 187 70.6
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 3.6e-70 268.9 220 64.1
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 4.7e-70 268.5 225 61.8
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 4.7e-70 268.5 177 73.4
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 6.2e-70 268.1 187 67.9
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.1e-69 267.3 169 78.1
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.1e-69 267.3 175 72.6
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 3.1e-69 265.8 200 66.5
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 4.0e-69 265.4 197 68.5
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 3.4e-68 262.3 213 64.8
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 4.4e-68 261.9 204 66.2
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 5.8e-68 261.5 226 62.8
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.8e-67 258.8 226 63.7
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 6.4e-67 258.1 225 60.4
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 8.4e-67 257.7 234 60.3
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 2.3e-64 249.6 173 68.8
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 2.3e-64 249.6 180 62.8
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.5e-63 246.9 218 58.7
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.9e-63 246.5 177 65.0
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.8e-62 241.9 155 74.8
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 6.2e-62 241.5 159 74.2
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.8e-61 240.0 186 70.4
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 2.4e-61 239.6 160 73.1
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.2e-60 237.3 221 59.7
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.8e-59 232.3 152 75.7
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 1.9e-58 229.9 155 71.0
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 4.6e-57 225.3 169 63.9
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 4.6e-57 225.3 223 57.0
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 6.6e-56 221.5 214 51.9
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 2.5e-55 219.5 199 56.3
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.4e-53 213.8 168 67.3
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.4e-53 213.8 229 54.6
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 1.8e-53 213.4 255 51.4
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 3.1e-53 212.6 174 64.9
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 7.6e-52 208.0 151 64.9
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.7e-51 206.8 225 51.6
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 3.9e-48 195.7 221 51.6
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.1e-45 187.6 206 54.4
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.2e-44 184.1 174 53.4
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 9.3e-42 174.5 218 46.3
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.5e-39 167.2 95 87.4
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 4.3e-39 165.6 104 76.0
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 9.6e-39 164.5 130 65.4
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.3e-38 164.1 110 74.5
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.0e-35 154.5 108 70.4
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.3e-35 154.1 126 61.1
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 4.3e-31 139.0 104 65.4
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.3e-31 139.0 76 86.8
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.7e-30 136.0 89 70.8
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.4e-29 134.0 95 67.4
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.8e-29 133.7 113 64.6
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 4.5e-28 129.0 142 54.2
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.0e-27 127.9 83 72.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.9e-26 123.6 159 42.8
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 2.4e-21 106.7 70 71.4
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 2.0e-20 103.6 92 59.8
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 4.5e-20 102.4 70 68.6
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 1.0e-19 101.3 80 61.2
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 3.6e-17 92.8 70 68.6
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 5.1e-16 89.0 53 77.4
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 3.3e-15 86.3 105 44.8
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 2.0e-12 77.0 59 64.4


User provided reference genes

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