Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 1.6e-24 115.2 55 100.0
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.3e-18 95.5 52 90.4
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.9e-17 91.7 51 82.4
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 2.5e-17 91.3 51 86.3
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 7.4e-17 89.7 51 84.3
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 9.6e-17 89.4 51 80.4
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.6e-16 88.6 50 86.0
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.6e-16 88.6 50 82.0
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 3.7e-16 87.4 47 85.1
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 4.8e-16 87.0 47 85.1
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.8e-16 87.0 48 83.3
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 4.8e-16 87.0 52 76.9
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 6.2e-16 86.7 47 85.1
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 6.2e-16 86.7 51 78.4
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 8.2e-16 86.3 47 83.0
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 8.2e-16 86.3 52 82.7
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.1e-15 85.9 50 78.0
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.1e-15 85.9 50 78.0
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.1e-15 85.9 51 76.5
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.1e-15 85.9 47 83.0
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.4e-15 85.5 52 78.8
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.4e-15 85.5 52 76.9
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.4e-15 85.5 52 76.9
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.4e-15 85.5 52 76.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 2.4e-15 84.7 45 84.4
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 4.0e-15 84.0 52 75.0
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 4.0e-15 84.0 52 80.8
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 4.0e-15 84.0 51 76.5
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 5.3e-15 83.6 52 76.9
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.9e-15 83.2 52 75.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 6.9e-15 83.2 52 75.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 6.9e-15 83.2 45 84.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.9e-15 83.2 45 84.4
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.9e-15 83.2 45 84.4
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.9e-15 83.2 45 84.4
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.9e-15 83.2 45 84.4
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 6.9e-15 83.2 47 83.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 6.9e-15 83.2 52 80.8
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 6.9e-15 83.2 51 74.5
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 9.0e-15 82.8 51 74.5
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 9.0e-15 82.8 51 78.4
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 9.0e-15 82.8 51 78.4
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.2e-14 82.4 51 76.5
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.2e-14 82.4 51 74.5
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 1.5e-14 82.0 45 82.2
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.0e-14 81.6 45 82.2
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 2.6e-14 81.3 52 78.8
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 2.6e-14 81.3 52 78.8
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 3.4e-14 80.9 51 74.5
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.5e-14 80.5 51 74.5
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 1.0e-13 79.3 51 70.6
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.0e-13 79.3 51 70.6
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.3e-13 79.0 51 68.6
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.3e-13 79.0 51 74.5
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.7e-13 78.6 51 68.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.7e-13 78.6 51 70.6
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.2e-13 78.2 47 74.5
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 2.2e-13 78.2 51 70.6
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 2.2e-13 78.2 51 70.6
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 2.2e-13 78.2 44 77.3
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 2.9e-13 77.8 64 60.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.9e-13 77.8 51 70.6
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.9e-13 77.8 51 70.6
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.8e-13 77.4 45 77.8
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 5.0e-13 77.0 42 83.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 5.0e-13 77.0 46 71.7
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 6.5e-13 76.6 51 68.6
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.5e-13 76.6 51 68.6
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 6.5e-13 76.6 51 66.7
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 6.5e-13 76.6 51 68.6
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 8.4e-13 76.3 42 81.0
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 8.4e-13 76.3 47 74.5
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 8.4e-13 76.3 45 75.6
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 8.4e-13 76.3 45 75.6
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 8.4e-13 76.3 45 75.6
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 8.4e-13 76.3 51 66.7
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.1e-12 75.9 51 70.6
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.4e-12 75.5 51 70.6
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.9e-12 75.1 51 68.6
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.9e-12 75.1 51 68.6
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.9e-12 75.1 51 68.6
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.9e-12 75.1 49 69.4
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 2.5e-12 74.7 45 73.3
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 2.5e-12 74.7 49 69.4
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.5e-12 74.7 39 87.2
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.2e-12 73.9 52 67.3
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 4.2e-12 73.9 51 64.7
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 4.2e-12 73.9 51 64.7
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.2e-11 72.4 60 60.0
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.2e-11 72.4 50 66.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 1.2e-11 72.4 45 66.7
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.6e-11 72.0 49 65.3
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.6e-11 72.0 51 64.7
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.7e-11 71.2 45 66.7
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 3.5e-11 70.9 60 58.3
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.6e-11 70.5 49 63.3
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 6.1e-11 70.1 45 68.9
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 7.9e-11 69.7 51 62.7
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 7.9e-11 69.7 51 64.7
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 7.9e-11 69.7 54 63.0
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.0e-10 69.3 51 66.7
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.0e-10 69.3 38 78.9
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 2.3e-10 68.2 51 60.8
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.3e-10 68.2 45 66.7
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.0e-10 67.8 47 59.6
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 3.0e-10 67.8 52 61.5
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 3.0e-10 67.8 52 61.5
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 3.0e-10 67.8 52 61.5
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 3.9e-10 67.4 52 61.5
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.9e-10 67.4 42 69.0
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 5.1e-10 67.0 54 61.1
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 5.1e-10 67.0 46 60.9
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 6.7e-10 66.6 38 78.9
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 8.7e-10 66.2 51 62.7
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 8.7e-10 66.2 41 65.9
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 8.7e-10 66.2 41 65.9
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.1e-09 65.9 52 61.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.1e-09 65.9 52 61.5
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.1e-09 65.9 52 61.5
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.1e-09 65.9 35 80.0
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.5e-09 65.5 51 62.7
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.5e-09 65.5 50 60.0
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.5e-09 65.5 53 58.5
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.9e-09 65.1 52 61.5
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.5e-09 64.7 34 82.4
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 4.3e-09 63.9 52 59.6
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 5.7e-09 63.5 34 82.4
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 5.7e-09 63.5 53 56.6
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 5.7e-09 63.5 53 56.6
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.3e-08 62.4 48 60.4
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.2e-08 61.6 61 52.5
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.2e-08 61.6 41 61.0
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 4.8e-08 60.5 38 73.7
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 6.3e-08 60.1 34 76.5
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 8.2e-08 59.7 34 76.5
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.1e-07 59.3 54 53.7
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.8e-07 58.5 29 86.2
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 4.1e-07 57.4 55 54.5
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.2e-06 55.8 55 50.9


User provided reference genes

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