Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 6.1e-110 401.0 226 100.0
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 1.3e-83 313.5 225 78.2
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 1.0e-64 250.8 229 68.1
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.8e-61 240.0 232 67.2
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.8e-61 240.0 232 67.2
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.8e-61 240.0 232 67.2
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.3e-61 238.4 231 65.8
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.7e-59 233.4 234 67.5
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.2e-58 228.8 245 64.9
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 9.6e-55 217.6 232 65.5
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 2.3e-48 196.4 229 55.0
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 2.3e-48 196.4 242 53.7
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 9.7e-47 191.0 237 54.4
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 4.8e-46 188.7 235 52.8
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 1.1e-45 187.6 240 55.4
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 5.3e-45 185.3 236 57.2
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 1.0e-43 181.0 242 48.8
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 1.3e-43 180.6 238 54.2
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 2.9e-43 179.5 238 50.4
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 5.0e-43 178.7 236 50.8
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 1.1e-42 177.6 238 53.8
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 5.5e-42 175.3 237 48.5
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 5.5e-42 175.3 230 49.1
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 7.2e-42 174.9 235 57.4
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 9.4e-42 174.5 235 53.2
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 1.2e-41 174.1 235 51.1
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 2.1e-41 173.3 231 48.9
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 2.1e-41 173.3 240 47.1
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 2.7e-41 172.9 229 50.2
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 4.6e-41 172.2 226 55.3
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 7.9e-41 171.4 229 55.5
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 1.4e-40 170.6 235 50.6
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 6.7e-40 168.3 235 50.2
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 8.8e-40 167.9 239 54.0
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 7.4e-39 164.9 236 52.1
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 2.8e-38 162.9 226 51.8
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 2.8e-38 162.9 235 47.2
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 3.7e-38 162.5 236 49.2
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 3.7e-38 162.5 232 47.4
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 4.8e-38 162.2 224 53.6
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 1.1e-37 161.0 226 56.2
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 4.1e-37 159.1 229 47.2
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 5.3e-37 158.7 235 48.9
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 5.3e-37 158.7 225 49.8
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 2.6e-36 156.4 226 46.9
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 3.4e-36 156.0 221 55.2
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 4.5e-36 155.6 220 48.6
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 1.0e-35 154.5 233 51.5
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 1.7e-35 153.7 245 50.6
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 6.5e-35 151.8 221 55.7
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 6.5e-35 151.8 231 47.6
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 1.1e-34 151.0 231 49.4
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.1e-34 151.0 236 44.1
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 1.1e-34 151.0 232 44.0
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 1.1e-34 151.0 234 50.4
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.4e-34 150.6 277 44.4
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 1.4e-34 150.6 229 48.9
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 5.5e-34 148.7 228 44.3
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 7.2e-34 148.3 228 43.9
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 7.2e-34 148.3 248 47.6
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 2.7e-33 146.4 222 47.3
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 7.9e-33 144.8 235 46.0
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.9e-32 142.5 228 50.0
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 5.1e-32 142.1 221 49.3
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 2.0e-31 140.2 228 43.4
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 5.7e-31 138.7 231 43.7
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 2.8e-30 136.3 234 40.6
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 3.7e-30 136.0 222 42.3
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 3.7e-30 136.0 236 40.7
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 4.8e-30 135.6 240 42.1
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 8.2e-30 134.8 355 39.4
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 8.2e-30 134.8 239 41.0
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 1.1e-29 134.4 231 42.0
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 3.1e-29 132.9 235 50.2
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 3.1e-29 132.9 238 44.5
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 9.1e-29 131.3 232 43.5
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 9.1e-29 131.3 225 47.1
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 1.2e-28 131.0 232 48.3
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 1.2e-28 131.0 112 65.2
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 1.6e-28 130.6 227 45.8
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.6e-28 129.8 231 42.9
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.6e-28 129.8 231 42.9
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 1.0e-27 127.9 229 43.7
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 6.5e-27 125.2 228 44.3
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 8.5e-27 124.8 238 40.8
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 4.2e-26 122.5 233 44.6
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 5.5e-26 122.1 215 47.4
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 6.1e-25 118.6 237 45.6
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 5.2e-24 115.5 219 47.0
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 1.1e-23 114.4 203 39.4
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 3.3e-23 112.8 198 50.5
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 3.3e-23 112.8 110 57.3
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 2.8e-22 109.8 217 41.9
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 3.7e-22 109.4 176 52.8
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 3.1e-21 106.3 84 67.9
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 7.0e-21 105.1 108 62.0
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 7.7e-20 101.7 138 50.0
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 1.0e-19 101.3 108 54.6
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 5.0e-19 99.0 196 42.3
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.2e-17 94.4 112 51.8
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 2.1e-17 93.6 231 38.1
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 2.1e-17 93.6 71 63.4
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 6.1e-17 92.0 71 64.8
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.8e-16 90.5 227 34.4
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 3.0e-16 89.7 78 61.5
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 8.8e-16 88.2 105 49.5
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 1.2e-15 87.8 167 38.9
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 1.3e-14 84.3 152 41.4
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 1.7e-14 84.0 236 31.4
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 3.7e-14 82.8 250 30.8
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 1.2e-12 77.8 87 51.7
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 7.7e-12 75.1 233 34.3
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 1.3e-11 74.3 219 31.5
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 3.8e-11 72.8 151 37.7
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 8.5e-11 71.6 115 42.6
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 1.5e-10 70.9 156 37.8
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 8.8e-08 61.6 208 32.2
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 4.9e-06 55.8 238 30.7


User provided reference genes

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