Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 5.0e-93 344.4 164 100.0
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 3.5e-46 188.7 97 88.7
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.9e-36 156.4 204 45.1
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.9e-36 156.4 204 44.6
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.6e-35 153.3 205 42.9
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.1e-34 150.6 204 42.6
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 4.0e-34 148.7 205 41.5
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.2e-34 148.3 204 41.2
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.2e-34 148.3 204 41.2
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.2e-33 147.1 204 41.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-33 147.1 204 41.7
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-33 147.1 204 41.7
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-33 147.1 204 41.7
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.2e-33 147.1 204 41.7
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.6e-33 146.0 204 40.2
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.6e-33 146.0 204 41.2
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.6e-33 146.0 205 40.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 3.4e-33 145.6 204 43.1
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.4e-33 145.6 204 41.2
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 5.8e-33 144.8 204 41.2
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 5.8e-33 144.8 183 42.6
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 5.8e-33 144.8 204 41.7
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.5e-33 144.4 204 40.7
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 7.5e-33 144.4 204 39.7
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 7.5e-33 144.4 204 42.2
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 7.5e-33 144.4 204 40.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 9.8e-33 144.1 204 40.7
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.3e-32 143.7 204 39.7
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.3e-32 143.7 204 41.7
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.7e-32 143.3 204 39.7
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.7e-32 143.3 204 40.7
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.9e-32 142.5 204 40.2
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 2.9e-32 142.5 204 40.7
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 2.9e-32 142.5 204 41.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.9e-32 142.5 204 40.2
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.9e-32 142.5 204 41.7
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 3.7e-32 142.1 204 38.7
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.7e-32 142.1 204 39.7
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 3.7e-32 142.1 204 40.2
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 4.9e-32 141.7 204 40.2
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 6.4e-32 141.4 204 39.7
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.3e-32 141.0 204 40.7
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 8.3e-32 141.0 204 40.7
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.1e-31 140.6 204 39.7
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.1e-31 140.6 204 40.2
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.1e-31 140.6 204 39.7
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.1e-31 140.6 204 38.7
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.4e-31 140.2 204 40.2
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.4e-31 140.2 204 38.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.4e-31 140.2 204 39.7
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.4e-31 139.4 205 39.5
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.2e-31 139.0 204 39.2
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 4.1e-31 138.7 204 38.2
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.4e-31 138.3 204 40.7
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 5.4e-31 138.3 201 41.3
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 7.0e-31 137.9 204 39.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 7.0e-31 137.9 204 40.2
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 7.0e-31 137.9 205 36.6
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 7.0e-31 137.9 204 38.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 2.1e-30 136.3 204 39.7
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.1e-30 136.3 202 39.1
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.7e-30 136.0 204 37.7
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-30 135.6 204 40.2
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-30 135.6 204 40.2
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.5e-30 135.6 204 40.2
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 4.6e-30 135.2 204 40.2
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.6e-30 135.2 204 39.2
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 4.6e-30 135.2 204 39.2
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 6.0e-30 134.8 204 40.2
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.0e-30 134.8 204 39.2
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.0e-29 134.0 204 39.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.3e-29 133.7 204 39.2
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.3e-29 133.7 204 39.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.3e-29 133.7 204 40.2
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.3e-29 133.7 204 37.7
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.7e-29 133.3 204 40.2
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 2.3e-29 132.9 204 38.2
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.3e-29 132.9 204 38.2
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.3e-29 132.9 204 39.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.9e-29 132.1 204 37.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 5.0e-29 131.7 204 37.3
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 8.6e-29 131.0 204 39.2
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.1e-28 130.6 204 38.2
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.1e-28 130.6 204 37.7
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.9e-28 129.8 204 38.7
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.9e-28 129.8 204 36.8
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.5e-28 129.4 196 38.3
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.5e-28 129.4 242 34.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.3e-28 129.0 204 38.2
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 4.3e-28 128.6 204 37.3
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 3.6e-27 125.6 204 37.3
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.6e-27 125.6 204 34.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 4.7e-27 125.2 219 37.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.8e-26 123.2 204 35.8
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.3e-26 122.9 204 36.8
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.2e-25 120.6 236 34.7
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.5e-25 120.2 67 82.1
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 4.4e-25 118.6 204 35.8
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.4e-25 118.6 209 35.4
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 9.9e-25 117.5 204 36.8
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.3e-24 117.1 69 72.5
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.9e-24 115.9 69 75.4
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 6.4e-24 114.8 204 34.8
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 8.3e-24 114.4 204 34.8
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.1e-23 114.0 207 33.8
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-23 114.0 68 73.5
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.2e-23 110.9 69 71.0
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 9.2e-23 110.9 69 69.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 9.2e-23 110.9 207 33.3
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.7e-22 109.4 204 34.8
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 4.6e-22 108.6 204 34.8
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.6e-22 108.6 204 34.8
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.0e-22 108.2 204 34.8
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 7.8e-22 107.8 204 32.4
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.0e-21 105.9 69 66.7
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.2e-19 100.5 85 58.8
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-18 96.7 205 32.2
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.1e-18 95.9 50 80.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 6.8e-18 94.7 205 30.7
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.2e-17 94.0 214 29.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.2e-17 94.0 69 59.4
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.2e-17 94.0 69 59.4
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.4e-17 92.4 203 29.1
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 7.6e-17 91.3 205 28.8
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.7e-16 90.1 204 27.9
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.8e-16 89.0 204 28.9
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.2e-15 85.9 68 54.4
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.4e-15 85.1 202 27.7
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.2e-15 84.3 177 31.6
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 9.2e-15 84.3 68 51.5
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.0e-13 80.9 39 82.1
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.0e-13 79.3 41 80.5
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 3.9e-13 79.0 37 86.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.3e-12 75.9 96 42.7
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.6e-12 75.1 44 70.5
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 9.6e-12 74.3 59 52.5
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.7e-11 72.0 43 69.8
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.4e-10 69.7 70 54.3
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.9e-10 68.2 67 55.2
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-09 66.6 36 77.8


User provided reference genes

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