Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.7e-213 744.6 370 100.0
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.2e-173 612.5 370 80.3
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.4e-172 609.0 370 80.0
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.1e-170 601.3 370 78.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 9.9e-166 587.0 370 75.4
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 3.2e-164 582.0 370 77.0
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.2e-164 581.6 367 77.9
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.2e-164 581.6 367 77.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 6.2e-160 567.8 372 75.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 4.0e-159 565.1 370 73.8
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 6.9e-159 564.3 370 74.6
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 9.9e-158 560.5 370 75.7
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.4e-156 555.8 371 73.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.1e-155 552.7 370 72.2
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.0e-154 550.4 370 72.4
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.8e-154 549.7 371 72.8
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 3.9e-154 548.5 372 71.8
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 5.1e-154 548.1 370 74.3
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 3.3e-153 545.4 370 73.0
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 9.6e-153 543.9 370 72.2
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.3e-152 543.5 371 71.4
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.4e-151 540.0 371 71.2
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.1e-151 538.9 370 70.5
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 6.9e-151 537.7 371 71.4
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.0e-150 536.2 370 71.4
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.4e-150 535.4 370 71.4
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.3e-149 533.5 370 70.3
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 2.9e-149 532.3 370 71.1
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 3.8e-149 531.9 306 86.9
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.9e-148 529.6 369 69.9
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 7.1e-148 527.7 378 69.8
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 9.3e-148 527.3 370 70.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.5e-147 525.4 329 78.4
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 3.9e-146 521.9 370 69.7
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 5.1e-146 521.5 375 67.7
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.9e-145 519.6 370 67.8
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 3.7e-144 515.4 370 66.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.8e-143 513.1 335 77.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 5.3e-143 511.5 370 67.0
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 6.9e-143 511.1 370 69.5
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 2.2e-141 506.1 371 68.5
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 8.4e-141 504.2 370 68.1
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.1e-140 503.8 353 72.0
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.9e-140 503.1 370 68.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.2e-140 502.3 370 65.9
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 9.3e-140 500.7 369 68.8
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.0e-138 497.3 363 67.5
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 6.7e-138 494.6 373 64.9
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.9e-137 493.0 370 66.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 3.3e-137 492.3 370 65.4
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 7.4e-137 491.1 371 65.2
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 6.3e-136 488.0 371 66.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 3.1e-135 485.7 371 64.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 3.1e-135 485.7 370 65.7
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 4.1e-135 485.3 370 64.1
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.6e-134 482.6 349 68.2
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.6e-134 482.6 349 71.1
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 4.5e-134 481.9 372 63.4
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 8.5e-133 477.6 370 64.9
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 7.2e-132 474.6 415 60.0
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 7.2e-132 474.6 370 61.6
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.6e-131 473.4 347 69.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.6e-131 473.4 371 61.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.1e-131 473.0 370 62.2
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.6e-131 471.9 374 64.4
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.4e-130 470.3 352 68.5
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.8e-130 467.6 370 61.6
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.5e-129 466.8 375 62.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 4.8e-128 461.8 370 63.0
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.1e-127 460.7 370 61.6
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.4e-127 459.5 355 64.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 6.9e-127 458.0 370 61.6
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.5e-126 456.8 403 58.3
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 4.5e-126 455.3 359 62.7
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 7.2e-124 448.0 374 59.6
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 3.6e-123 445.7 387 59.9
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 4.7e-123 445.3 380 61.1
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.7e-123 445.3 377 61.0
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.0e-122 444.1 371 63.1
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.3e-122 443.0 379 61.7
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 5.1e-122 441.8 374 59.6
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 8.8e-122 441.0 382 59.9
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.5e-121 440.3 374 60.7
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 2.6e-121 439.5 375 60.5
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 5.7e-121 438.3 378 59.8
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 7.4e-121 438.0 347 63.1
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 9.7e-121 437.6 382 59.7
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 2.2e-120 436.4 376 60.1
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 6.3e-120 434.9 381 59.8
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 8.2e-120 434.5 382 59.2
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.8e-119 433.3 321 64.8
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 4.1e-119 432.2 347 62.5
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.2e-118 430.6 386 59.1
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.5e-118 430.3 376 59.8
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.5e-118 429.1 385 58.7
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 4.5e-118 428.7 386 58.5
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.0e-117 427.6 326 64.7
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.3e-117 427.2 385 58.7
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.3e-117 427.2 370 62.7
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.5e-116 422.9 371 58.5
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.6e-115 419.1 372 57.5
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.8e-114 416.8 381 58.5
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.7e-112 409.1 355 58.6
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.1e-111 406.0 362 58.6
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 3.5e-110 402.5 355 58.0
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.3e-109 400.6 370 52.7
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 2.9e-109 399.4 350 59.1
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 6.5e-109 398.3 370 53.0
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.1e-108 397.5 370 53.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.5e-108 397.1 306 63.7
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.9e-108 396.7 367 56.7
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.1e-107 393.3 323 61.0
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.8e-106 390.2 372 55.9
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 8.8e-106 387.9 332 59.3
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 9.8e-105 384.4 374 53.7
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.1e-103 377.9 372 50.8
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.5e-102 375.6 394 50.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 6.1e-99 365.2 383 50.9
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 4.0e-98 362.5 345 53.3
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.8e-93 345.9 370 50.8
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.3e-85 320.9 241 65.6
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.5e-84 317.4 232 65.5
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 4.7e-83 312.4 343 48.4
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 4.7e-83 312.4 383 45.4
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 8.9e-82 308.1 273 58.2
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 4.4e-81 305.8 302 56.3
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 2.9e-80 303.1 481 40.3
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 8.3e-80 301.6 300 53.3
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.2e-79 299.7 287 55.1
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.5e-76 290.0 410 40.0
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.6e-75 287.3 259 57.1
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.6e-69 265.4 241 58.1
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 6.6e-69 265.4 387 40.6
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.5e-65 254.2 392 36.7
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 4.9e-64 249.2 231 55.4
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.5e-62 243.0 255 52.5
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.0e-62 242.3 260 48.8
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 7.3e-60 235.3 214 53.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.6e-57 226.9 209 58.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.4e-55 221.1 339 38.6
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 6.9e-50 202.2 383 32.4
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.8e-49 199.1 153 66.0
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.9e-49 198.4 115 80.9
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.8e-43 180.3 137 64.2
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 4.3e-28 129.8 74 82.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.8e-26 124.4 432 24.3
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.7e-24 117.9 147 49.7
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 7.9e-22 109.0 201 29.4
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 5.9e-17 92.8 73 65.8
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 3.8e-16 90.1 51 86.3
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.4e-15 88.2 120 41.7
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.6e-14 84.7 78 56.4
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.4e-13 81.6 42 88.1
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 8.8e-13 79.0 85 49.4
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 2.2e-08 64.3 39 82.1
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 4.2e-07 60.1 59 50.8


User provided reference genes

Program Settings