Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 8.8e-215 750.0 368 100.0
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.1e-144 516.2 335 77.0
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.7e-136 488.8 328 74.4
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.3e-135 485.0 334 72.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.3e-135 485.0 334 72.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 6.9e-135 484.6 328 73.8
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.4e-133 478.0 334 71.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 4.5e-126 455.3 335 66.3
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 2.7e-123 446.0 335 67.2
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.3e-120 437.2 337 66.2
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.2e-118 430.6 334 65.6
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.5e-118 428.7 337 64.7
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.5e-117 424.9 335 66.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.2e-115 420.6 335 63.0
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 3.6e-115 419.1 335 64.2
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.0e-114 417.5 337 62.3
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.0e-114 416.0 335 63.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.9e-114 415.6 335 62.4
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 5.1e-114 415.2 335 63.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 5.1e-114 415.2 330 62.7
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 3.3e-113 412.5 335 62.4
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 5.7e-113 411.8 293 71.3
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.4e-113 411.4 340 62.1
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 7.4e-113 411.4 335 62.1
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.7e-112 410.2 330 62.7
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 6.3e-112 408.3 348 61.2
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.4e-111 406.4 334 62.3
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.9e-109 399.4 336 60.7
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.4e-108 397.1 335 60.0
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.2e-108 396.0 335 60.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 3.9e-106 389.0 331 59.5
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.9e-106 389.0 335 60.9
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.1e-106 388.7 335 60.9
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 5.1e-106 388.7 335 60.3
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.3e-105 386.0 338 60.1
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 5.7e-105 385.2 337 59.3
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 2.8e-104 382.9 268 74.3
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 3.7e-104 382.5 335 57.6
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 3.7e-104 382.5 329 59.9
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 6.3e-104 381.7 325 60.3
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 8.2e-104 381.3 334 58.4
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 4.1e-103 379.0 335 59.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 5.3e-103 378.6 388 53.6
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.6e-102 376.3 339 58.7
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.2e-101 373.2 336 58.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.8e-101 372.5 334 58.4
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 3.8e-101 372.5 329 58.7
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 3.8e-101 372.5 337 57.6
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 5.0e-101 372.1 335 58.5
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 5.0e-101 372.1 335 60.0
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 6.5e-101 371.7 295 65.4
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 2.5e-100 369.8 337 58.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 9.4e-100 367.9 335 56.4
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.2e-99 367.5 335 54.6
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.6e-99 367.1 328 57.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.6e-99 367.1 334 58.4
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.0e-98 364.4 341 55.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.4e-98 364.0 335 55.5
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.8e-98 361.3 339 58.4
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.5e-97 360.5 335 58.2
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.0e-97 360.1 318 61.0
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.3e-96 357.5 337 54.9
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 3.7e-96 355.9 340 55.0
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.4e-95 354.0 355 51.8
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.4e-95 354.0 354 51.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.4e-95 353.2 335 56.1
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 5.3e-95 352.1 337 53.7
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 9.1e-95 351.3 309 58.9
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.6e-94 350.5 355 51.5
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 3.5e-94 349.4 328 55.8
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 5.9e-94 348.6 331 56.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.9e-93 346.3 313 57.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.9e-92 343.6 328 52.7
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 3.6e-91 339.3 340 55.0
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 6.1e-91 338.6 342 55.0
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.4e-90 337.4 344 55.2
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 3.0e-90 336.3 329 53.8
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 5.2e-90 335.5 332 53.0
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 6.7e-90 335.1 339 54.3
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 6.7e-90 335.1 332 53.9
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.6e-89 333.2 346 54.9
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.3e-89 332.8 347 53.3
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 4.4e-89 332.4 346 53.5
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 4.4e-89 332.4 310 58.7
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 9.7e-89 331.3 339 51.9
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.8e-88 329.7 370 48.9
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 3.7e-88 329.3 342 54.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.4e-87 327.4 346 53.5
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 1.8e-87 327.0 312 55.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 2.4e-87 326.6 346 52.9
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 3.1e-87 326.2 309 55.0
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.1e-87 325.9 346 53.2
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 9.1e-87 324.7 341 53.7
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 9.1e-87 324.7 340 52.1
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.7e-86 323.2 343 54.2
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.7e-86 323.2 339 53.4
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.7e-86 321.6 289 57.1
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 7.7e-86 321.6 352 52.6
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.7e-85 320.5 333 52.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.7e-85 320.5 351 51.3
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 2.2e-85 320.1 350 52.9
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.9e-85 319.7 351 52.7
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 8.5e-85 318.2 350 52.9
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 7.2e-84 315.1 354 48.6
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 2.1e-83 313.5 345 53.0
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 2.1e-83 313.5 337 51.3
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.4e-82 310.8 335 49.3
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 5.2e-82 308.9 336 51.2
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 4.4e-81 305.8 352 49.1
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.7e-80 303.9 336 47.6
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.7e-80 302.8 336 47.3
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.7e-78 296.6 329 50.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 9.5e-76 288.1 341 46.0
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.0e-75 285.0 335 45.4
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-74 284.6 350 45.7
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 3.0e-74 283.1 335 47.8
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.2e-73 281.2 309 50.2
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 2.0e-73 280.4 258 57.4
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.2e-72 276.9 310 47.7
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.2e-72 276.9 288 50.7
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 4.9e-72 275.8 217 64.5
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.5e-70 269.6 274 53.6
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 7.8e-70 268.5 295 53.2
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.3e-69 267.7 301 49.5
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.2e-67 261.2 288 50.7
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 6.4e-64 248.8 260 52.7
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.6e-62 244.2 341 41.6
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 3.0e-61 240.0 368 38.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.8e-58 230.7 256 50.0
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.6e-57 226.9 347 38.9
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 9.8e-57 224.9 300 42.7
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 6.4e-56 222.2 394 37.8
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 6.6e-53 212.2 333 37.8
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.1e-52 211.5 199 54.8
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.6e-51 207.6 261 46.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 8.9e-50 201.8 220 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.4e-49 199.5 349 35.0
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.5e-44 183.7 113 77.9
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 6.4e-40 169.1 339 33.0
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.9e-39 167.5 137 61.3
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.1e-38 164.1 155 48.4
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.5e-38 163.3 199 46.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.8e-35 153.7 167 49.7
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.6e-27 126.7 110 56.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.4e-24 115.9 147 49.0
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.5e-20 104.8 278 28.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.1e-15 88.6 306 23.2
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.0e-13 80.5 120 40.0
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 5.1e-13 79.7 72 61.1
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 3.3e-12 77.0 44 79.5
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.8e-10 71.2 49 67.3
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.3e-08 65.1 86 46.5
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 4.2e-07 60.1 39 76.9
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 9.3e-07 58.9 78 42.3


User provided reference genes

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