Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.1e-119 433.3 228 100.0
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 9.0e-101 370.5 227 86.8
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 4.0e-93 345.1 228 77.2
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.6e-92 342.4 224 78.1
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.3e-91 340.1 224 77.7
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.2e-91 339.3 221 78.7
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 6.4e-91 337.8 222 79.3
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 6.4e-91 337.8 222 78.8
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.9e-90 336.3 230 76.1
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.9e-90 336.3 224 75.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 3.2e-90 335.5 218 78.4
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.2e-90 335.5 227 77.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.1e-90 334.3 218 78.0
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.6e-89 333.2 222 77.9
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.1e-89 332.8 221 76.0
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 2.7e-89 332.4 221 76.0
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.5e-89 332.0 221 75.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 4.6e-89 331.6 221 75.6
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 8.7e-88 327.4 228 73.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.9e-87 326.2 230 74.3
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 3.3e-87 325.5 224 75.4
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 3.3e-87 325.5 226 73.5
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.3e-87 325.5 226 75.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 9.6e-87 323.9 225 75.1
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 2.1e-86 322.8 225 75.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.8e-86 322.4 230 73.0
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 6.2e-86 321.2 227 75.3
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.3e-85 318.2 230 71.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.4e-84 315.5 222 73.4
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.8e-84 314.7 230 70.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.7e-83 313.2 225 71.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.2e-83 312.8 225 71.1
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.1e-82 310.5 219 74.0
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.9e-82 309.7 222 73.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.2e-82 308.9 228 71.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.5e-82 308.1 221 71.9
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 7.1e-82 307.8 224 73.2
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 9.3e-82 307.4 227 74.4
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.7e-81 305.8 220 72.7
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.5e-81 305.4 227 72.7
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.6e-81 305.1 240 66.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.9e-81 304.3 219 70.3
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.0e-80 303.9 224 71.4
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.8e-80 303.1 218 70.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.3e-80 302.8 220 71.4
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.0e-80 302.4 227 71.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.9e-80 302.0 219 70.8
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 5.1e-80 301.6 219 70.8
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 5.1e-80 301.6 230 66.5
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 6.7e-80 301.2 230 71.7
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.7e-80 301.2 222 70.3
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.5e-79 300.1 232 65.5
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.5e-79 299.3 239 64.0
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.3e-79 298.5 247 64.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 5.7e-79 298.1 224 70.5
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 5.7e-79 298.1 221 70.1
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 7.4e-79 297.7 227 67.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 9.7e-79 297.4 217 69.1
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-78 296.6 224 70.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-78 296.6 228 67.1
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.8e-78 295.8 228 65.4
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.7e-78 295.4 228 65.8
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 4.8e-78 295.0 224 71.0
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 4.8e-78 295.0 222 67.6
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 6.3e-78 294.7 228 66.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 8.2e-78 294.3 228 65.8
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 8.2e-78 294.3 228 65.8
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 8.2e-78 294.3 219 70.3
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-77 293.5 224 70.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.4e-77 293.5 236 63.6
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.4e-77 293.5 225 70.7
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.4e-77 293.5 221 67.4
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.8e-77 293.1 221 66.5
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.8e-77 293.1 228 65.8
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.8e-77 293.1 225 72.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.4e-77 292.7 238 61.8
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 3.1e-77 292.4 225 66.2
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.9e-77 291.2 210 71.4
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 9.0e-77 290.8 224 70.5
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.5e-76 290.0 236 62.7
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.5e-76 290.0 220 66.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.6e-76 289.3 221 66.5
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.6e-76 289.3 224 68.3
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 4.5e-76 288.5 217 68.7
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 5.9e-76 288.1 231 65.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.3e-75 287.0 241 63.1
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.3e-75 287.0 224 68.8
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.7e-75 286.6 224 70.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 6.5e-75 284.6 237 62.0
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 3.2e-74 282.3 218 67.0
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 9.4e-74 280.8 224 65.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.6e-73 280.0 219 65.8
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.6e-73 280.0 228 63.2
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 7.9e-73 277.7 219 65.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.8e-72 276.6 219 64.8
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.8e-72 276.6 229 62.4
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.7e-72 274.6 219 64.4
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.5e-71 273.5 281 55.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 8.2e-70 267.7 261 56.7
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.1e-69 267.3 219 64.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 3.1e-69 265.8 230 60.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.0e-68 263.1 224 59.8
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.0e-68 263.1 228 60.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.3e-67 260.4 221 62.4
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.7e-67 260.0 162 84.0
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.4e-66 256.9 217 61.3
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.4e-66 256.9 223 60.1
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 5.5e-66 255.0 186 68.8
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.6e-65 253.4 222 61.3
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 2.0e-63 246.5 214 62.1
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 4.4e-63 245.4 215 60.9
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 4.1e-61 238.8 163 74.8
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.5e-60 235.7 231 53.2
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.5e-60 235.3 221 57.9
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 8.5e-59 231.1 223 56.5
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.5e-58 230.3 175 69.7
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.2e-58 228.8 244 50.0
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 2.1e-57 226.5 172 68.6
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 5.2e-56 221.9 227 54.6
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 4.4e-55 218.8 154 76.0
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 9.7e-55 217.6 163 66.9
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 9.7e-55 217.6 242 47.9
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.7e-54 215.7 159 71.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 8.5e-51 204.5 169 60.9
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.4e-50 201.1 142 73.2
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.3e-48 196.4 224 53.1
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.4e-45 185.3 145 64.8
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.5e-42 176.4 118 75.4
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 1.2e-41 174.1 220 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.8e-40 170.2 187 50.3
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.3e-40 169.9 145 60.7
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.0e-40 169.5 219 45.7
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 8.8e-40 167.9 193 48.7
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-39 167.5 221 44.8
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.2e-36 157.5 232 44.4
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 2.7e-36 156.4 114 70.2
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 4.5e-36 155.6 114 68.4
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 4.5e-36 155.6 115 72.2
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.3e-35 154.1 191 47.6
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 8.6e-35 151.4 184 50.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 3.6e-33 146.0 218 37.2
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 8.0e-33 144.8 143 55.9
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.3e-32 143.3 126 64.3
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.3e-30 137.5 218 40.4
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.2e-29 131.3 145 52.4
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.3e-26 122.9 181 42.0
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.3e-26 122.9 222 37.8
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.2e-25 120.9 140 51.4
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 8.0e-25 118.2 78 74.4
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 8.0e-25 118.2 78 74.4
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 2.3e-24 116.7 181 48.1
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 5.8e-23 112.1 96 57.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.8e-23 112.1 90 65.6
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.4e-21 106.7 77 71.4
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 4.1e-21 105.9 139 45.3
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 9.2e-21 104.8 109 50.5
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 4.6e-20 102.4 117 53.8
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.0e-19 99.8 101 52.5
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 8.6e-19 98.2 93 57.0
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 8.6e-19 98.2 80 63.8
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-18 97.4 55 87.3
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.5e-18 96.7 172 38.4
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 4.3e-18 95.9 202 36.1
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 4.3e-18 95.9 202 36.1
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.6e-17 92.8 82 62.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 5.2e-16 89.0 52 80.8
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.8e-16 88.6 80 60.0
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.0e-15 87.0 53 79.2
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-15 86.7 53 79.2
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-15 86.7 53 79.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 3.4e-15 86.3 53 81.1
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.8e-15 84.7 79 51.9
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-13 81.3 75 58.7
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.9e-13 80.5 68 60.3
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 2.4e-13 80.1 191 34.0
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.6e-12 77.4 89 47.2
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 4.6e-12 75.9 72 58.3
MD09G1147900 Malus domestica HOM05D003667 ORTHO05D248526 1.7e-11 73.9 43 88.4
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.0e-11 73.2 111 45.9
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 3.0e-11 73.2 43 86.0
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 8.9e-08 61.6 79 48.1
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 5.8e-07 58.9 51 58.8
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 5.8e-07 58.9 57 59.6
QL12p020243 Quercus lobata HOM05D003667 ORTHO05D004397 6.4e-06 55.5 48 62.5


User provided reference genes

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