Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1193100 Malus domestica HOM05D005406 ORTHO05D006599 4.2e-47 191.0 99 100.0
MD10G1115400 Malus domestica HOM05D005406 ORTHO05D006599 2.1e-38 162.2 95 88.4
MD05G1112800 Malus domestica HOM05D005406 ORTHO05D006599 1.0e-37 159.8 95 87.4
Prupe.8G157400 Prunus persica HOM05D005406 ORTHO05D006599 2.1e-30 135.6 95 75.8
FvH4_2g02400 Fragaria vesca HOM05D005406 ORTHO05D006599 1.5e-28 129.4 95 70.5
FvH4_2g02480 Fragaria vesca HOM05D005406 ORTHO05D006599 1.5e-28 129.4 95 70.5
FAN15G2054 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.5e-28 129.4 95 70.5
FAN20G2478 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.5e-28 129.4 95 70.5
FAN24G0505 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.5e-28 129.4 95 70.5
FAN27G0850 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.5e-28 129.4 95 70.5
Haze_10359 Corylus avellana HOM05D005406 ORTHO05D006599 7.5e-28 127.1 95 70.5
AL8G41900 Arabidopsis lyrata HOM05D005406 ORTHO05D006599 9.8e-28 126.7 93 72.0
MD07G1171900 Malus domestica HOM05D005406 ORTHO05D006599 1.7e-27 125.9 76 80.3
Cfa004762 Carpinus fangiana HOM05D005406 ORTHO05D006599 3.7e-27 124.8 90 72.2
RcHm_v2.0_Chr6g0246311 Rosa chinensis HOM05D005406 ORTHO05D006599 1.8e-26 122.5 96 71.9
Carub.0008s2531 Capsella rubella HOM05D005406 ORTHO05D006599 4.1e-26 121.3 90 71.1
AT5G64510 Arabidopsis thaliana HOM05D005406 ORTHO05D006599 5.4e-26 120.9 90 70.0
TWI14G0527 Tripterygium wilfordii HOM05D005406 ORTHO05D006599 1.2e-25 119.8 91 67.0
Thhalv10004273m.g Eutrema salsugineum HOM05D005406 ORTHO05D006599 2.7e-25 118.6 90 68.9
Aa31LG1G17410 Aethionema arabicum HOM05D005406 ORTHO05D006599 3.0e-24 115.2 90 66.7
THA.LOC104819322 Tarenaya hassleriana HOM05D005406 ORTHO05D006599 5.0e-24 114.4 90 66.7
CiPaw.05G025100 Carya illinoinensis HOM05D005406 ORTHO05D006599 6.6e-24 114.0 93 66.7
QL11p027148 Quercus lobata HOM05D005406 ORTHO05D006599 6.6e-24 114.0 106 60.4
CSS0000362 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 8.6e-24 113.6 88 68.2
CSS0039463 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 8.6e-24 113.6 88 68.2
Nitab4.5_0005609g0080 Nicotiana tabacum HOM05D005406 ORTHO05D006599 1.5e-23 112.8 94 59.6
BraA06t26063Z Brassica rapa HOM05D005406 ORTHO05D006599 2.5e-23 112.1 90 66.7
SalBow6G6486 Salvia bowleyana HOM05D005406 ORTHO05D006599 2.5e-23 112.1 93 60.2
A06p31250 Brassica napus HOM05D005406 ORTHO05D006599 3.3e-23 111.7 90 66.7
C03p61740 Brassica napus HOM05D005406 ORTHO05D006599 3.3e-23 111.7 90 66.7
BolC3t18435H Brassica oleracea HOM05D005406 ORTHO05D006599 3.3e-23 111.7 90 66.7
Dinv16046 Davidia involucrata HOM05D005406 ORTHO05D006599 3.3e-23 111.7 78 70.5
Hma1.2p1_0435F.1_g152460 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 3.3e-23 111.7 90 64.4
EL10Ac9g22145 Beta vulgaris HOM05D005406 ORTHO05D006599 5.6e-23 110.9 94 59.6
CARHR278480 Cardamine hirsuta HOM05D005406 ORTHO05D006599 5.6e-23 110.9 90 63.3
AUR62027061 Chenopodium quinoa HOM05D005406 ORTHO05D006599 5.6e-23 110.9 90 60.0
Eucgr.I02516 Eucalyptus grandis HOM05D005406 ORTHO05D006599 5.6e-23 110.9 93 66.7
Sabra09G0063200 Salix brachista HOM05D005406 ORTHO05D006599 5.6e-23 110.9 93 63.4
Cc02_g20410 Coffea canephora HOM05D005406 ORTHO05D006599 7.3e-23 110.5 95 62.1
CAN.G504.65 Capsicum annuum HOM05D005406 ORTHO05D006599 9.5e-23 110.2 93 60.2
Cpa.g.sc20.64 Carica papaya HOM05D005406 ORTHO05D006599 1.2e-22 109.8 88 67.0
Manes.07G049000 Manihot esculenta HOM05D005406 ORTHO05D006599 1.2e-22 109.8 89 61.8
Peaxi162Scf00299g00335 Petunia axillaris HOM05D005406 ORTHO05D006599 1.2e-22 109.8 90 63.3
SalBow6G6746 Salvia bowleyana HOM05D005406 ORTHO05D006599 1.2e-22 109.8 89 61.8
PGSC0003DMG400005102 Solanum tuberosum HOM05D005406 ORTHO05D006599 1.2e-22 109.8 93 59.1
MSTRG.5302 Avicennia marina HOM05D005406 ORTHO05D006599 1.6e-22 109.4 90 61.1
TAR625G1228 Trochodendron aralioides HOM05D005406 ORTHO05D006599 1.6e-22 109.4 89 67.4
GSVIVG01036964001 Vitis vinifera HOM05D005406 ORTHO05D006599 1.6e-22 109.4 90 62.2
Nitab4.5_0001477g0200 Nicotiana tabacum HOM05D005406 ORTHO05D006599 2.1e-22 109.0 93 61.3
Potri.009G081500 Populus trichocarpa HOM05D005406 ORTHO05D006599 2.1e-22 109.0 93 63.4
Oeu014213.1 Olea europaea HOM05D005406 ORTHO05D006599 3.6e-22 108.2 88 61.4
TAR381G0409 Trochodendron aralioides HOM05D005406 ORTHO05D006599 3.6e-22 108.2 97 61.9
Solyc01g106470.3 Solanum lycopersicum HOM05D005406 ORTHO05D006599 4.7e-22 107.8 93 59.1
arahy.Tifrunner.gnm1.ann1.6V09A5 Arachis hypogaea HOM05D005406 ORTHO05D006599 6.2e-22 107.5 95 60.0
arahy.Tifrunner.gnm1.ann1.SJVP3Q Arachis hypogaea HOM05D005406 ORTHO05D006599 6.2e-22 107.5 95 60.0
MSTRG.16653 Avicennia marina HOM05D005406 ORTHO05D006599 1.4e-21 106.3 98 55.1
Sopen01g048840 Solanum pennellii HOM05D005406 ORTHO05D006599 1.4e-21 106.3 93 59.1
Duzib248G0763 Durio zibethinus HOM05D005406 ORTHO05D006599 1.8e-21 105.9 91 62.6
AUR62030902 Chenopodium quinoa HOM05D005406 ORTHO05D006599 2.3e-21 105.5 101 56.4
Gohir.A01G179200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 3.1e-21 105.1 90 57.8
CANSAT25G3620 Cannabis sativa HOM05D005406 ORTHO05D006599 4.0e-21 104.8 93 58.1
Gohir.D01G170000 Gossypium hirsutum HOM05D005406 ORTHO05D006599 4.0e-21 104.8 90 61.1
Gorai.002G211600 Gossypium raimondii HOM05D005406 ORTHO05D006599 4.0e-21 104.8 90 61.1
COL.COLO4_17837 Corchorus olitorius HOM05D005406 ORTHO05D006599 6.8e-21 104.0 91 62.6
unitig_747.g21249 Utricularia gibba HOM05D005406 ORTHO05D006599 6.8e-21 104.0 88 55.7
Hma1.2p1_2001F.1_g310660 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 1.5e-20 102.8 93 63.4
Sp2g27590 Schrenkiella parvula HOM05D005406 ORTHO05D006599 2.0e-20 102.4 90 62.2
Aqoxy6G00604 Aquilegia oxysepala HOM05D005406 ORTHO05D006599 2.6e-20 102.1 61 77.0
Migut.B00502 Erythranthe guttata HOM05D005406 ORTHO05D006599 2.6e-20 102.1 95 56.8
Thecc.02G035200 Theobroma cacao HOM05D005406 ORTHO05D006599 2.6e-20 102.1 88 62.5
Ciclev10028503m.g Citrus clementina HOM05D005406 ORTHO05D006599 4.4e-20 101.3 89 61.8
ECA234G4519 Erigeron canadensis HOM05D005406 ORTHO05D006599 4.4e-20 101.3 90 60.0
DCAR_021922 Daucus carota HOM05D005406 ORTHO05D006599 5.8e-20 100.9 92 56.5
HanXRQChr10g0291291 Helianthus annuus HOM05D005406 ORTHO05D006599 5.8e-20 100.9 88 61.4
Atru.chr5.2137 Acer truncatum HOM05D005406 ORTHO05D006599 1.3e-19 99.8 87 58.6
PGR142G0824 Punica granatum HOM05D005406 ORTHO05D006599 1.3e-19 99.8 93 58.1
Duzib132G0847 Durio zibethinus HOM05D005406 ORTHO05D006599 2.2e-19 99.0 88 59.1
Manes.10G090700 Manihot esculenta HOM05D005406 ORTHO05D006599 2.9e-19 98.6 66 68.2
PSO541G4550 Papaver somniferum HOM05D005406 ORTHO05D006599 2.9e-19 98.6 95 58.9
PSO675G0725 Papaver somniferum HOM05D005406 ORTHO05D006599 2.9e-19 98.6 90 58.9
Oeu005736.1 Olea europaea HOM05D005406 ORTHO05D006599 3.7e-19 98.2 88 56.8
Hund00407 Selenicereus undatus HOM05D005406 ORTHO05D006599 3.7e-19 98.2 86 55.8
Lsat_1_v5_gn_5_110661 Lactuca sativa HOM05D005406 ORTHO05D006599 4.9e-19 97.8 90 56.7
MBI16_g33605_MAGBIO Magnolia biondii HOM05D005406 ORTHO05D006599 8.3e-19 97.1 97 56.7
MBI16_g33603_MAGBIO Magnolia biondii HOM05D005406 ORTHO05D006599 1.1e-18 96.7 97 55.7
Nn1g05945 Nelumbo nucifera HOM05D005406 ORTHO05D006599 1.1e-18 96.7 99 55.6
Gohir.A12G031100 Gossypium hirsutum HOM05D005406 ORTHO05D006599 3.2e-18 95.1 91 58.2
Gorai.008G043000 Gossypium raimondii HOM05D005406 ORTHO05D006599 7.0e-18 94.0 91 59.3
Medtr2g010460 Medicago truncatula HOM05D005406 ORTHO05D006599 7.0e-18 94.0 87 56.3
Os01g0767600 Oryza sativa ssp. japonica HOM05D005406 ORTHO05D006599 7.0e-18 94.0 94 55.3
Actinidia28010 Actinidia chinensis HOM05D005406 ORTHO05D006599 9.2e-18 93.6 88 59.1
Lj9A341G45 Lonicera japonica HOM05D005406 ORTHO05D006599 1.2e-17 93.2 56 76.8
Lj6g0016064 Lotus japonicus HOM05D005406 ORTHO05D006599 1.2e-17 93.2 82 59.8
Ca_00193_v3 Cicer arietinum L. HOM05D005406 ORTHO05D006599 2.0e-17 92.4 72 61.1
Lalb_Chr18g0060221 Lupinus albus HOM05D005406 ORTHO05D006599 2.0e-17 92.4 95 57.9
unitig_699.g19863 Utricularia gibba HOM05D005406 ORTHO05D006599 3.5e-17 91.7 87 52.9
Ah.01g024310 Amaranthus hybridus HOM05D005406 ORTHO05D006599 6.0e-17 90.9 55 76.4
Gohir.D12G041200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 6.0e-17 90.9 91 58.2
Rhsim05G0094300 Rhododendron simsii HOM05D005406 ORTHO05D006599 6.0e-17 90.9 57 71.9
Zm00001eb370180 Zea mays HOM05D005406 ORTHO05D006599 7.8e-17 90.5 63 69.8
TPR.G32656 Trifolium pratense HOM05D005406 ORTHO05D006599 1.0e-16 90.1 96 52.1
vmacro19583 Vaccinium macrocarpon HOM05D005406 ORTHO05D006599 1.0e-16 90.1 59 71.2
SHI04907 Sapria himalayana HOM05D005406 ORTHO05D006599 1.7e-16 89.4 82 54.9
Psat1g212280 Pisum sativum HOM05D005406 ORTHO05D006599 1.1e-15 86.7 86 57.0
HPP92_019511 Vanilla planifolia HOM05D005406 ORTHO05D006599 1.5e-15 86.3 98 53.1
Glyma.13G253400 Glycine max HOM05D005406 ORTHO05D006599 1.9e-15 85.9 66 62.1
HanXRQChr03g0075901 Helianthus annuus HOM05D005406 ORTHO05D006599 1.9e-15 85.9 89 55.1
Phvul.006G198300 Phaseolus vulgaris HOM05D005406 ORTHO05D006599 1.6e-14 82.8 66 60.6
Glyma.15G061500 Glycine max HOM05D005406 ORTHO05D006599 2.1e-14 82.4 64 62.5
VMungo0540G2475 Vigna mungo HOM05D005406 ORTHO05D006599 3.6e-14 81.6 66 59.1
SGA_v2.0_scaffold20G09089 Striga asiatica HOM05D005406 ORTHO05D006599 4.7e-14 81.3 55 72.7
CDE07G0437 Ceratophyllum demersum HOM05D005406 ORTHO05D006599 8.1e-14 80.5 69 52.2
HPP92_018708 Vanilla planifolia HOM05D005406 ORTHO05D006599 8.1e-14 80.5 63 63.5
Sed0003204 Sechium edule HOM05D005406 ORTHO05D006599 2.6e-12 75.5 54 63.0
CDE07G1368 Ceratophyllum demersum HOM05D005406 ORTHO05D006599 4.4e-12 74.7 69 50.7
ATR0767G021 Amborella trichopoda HOM05D005406 ORTHO05D006599 7.5e-12 73.9 70 51.4
ClCG02G007430 Citrullus lanatus HOM05D005406 ORTHO05D006599 1.7e-11 72.8 104 44.2
Lsat_1_v5_gn_7_83500 Lactuca sativa HOM05D005406 ORTHO05D006599 2.9e-11 72.0 75 48.0
Sed0011512 Sechium edule HOM05D005406 ORTHO05D006599 2.9e-11 72.0 94 43.6
CsaV3_7G007470 Cucumis sativus L. HOM05D005406 ORTHO05D006599 6.4e-11 70.9 104 41.3
MELO3C018554.2 Cucumis melo HOM05D005406 ORTHO05D006599 8.3e-11 70.5 56 55.4
HPP92_018788 Vanilla planifolia HOM05D005406 ORTHO05D006599 8.3e-11 70.5 63 57.1
ECA236G2632 Erigeron canadensis HOM05D005406 ORTHO05D006599 5.4e-10 67.8 70 51.4
Ah.01g007830 Amaranthus hybridus HOM05D005406 ORTHO05D006599 2.7e-09 65.5 44 68.2
Mapoly0020s0010 Marchantia polymorpha HOM05D005406 ORTHO05D006599 4.3e-07 58.2 92 33.7
Pp3c15_22880 Physcomitrium patens HOM05D005406 ORTHO05D006599 4.7e-06 54.7 63 31.7
SEGI_14450 Sequoiadendron giganteum HOM05D005406 ORTHO05D006599 8.1e-06 53.9 65 36.9


User provided reference genes

Program Settings