Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1187400 Malus domestica HOM05D002156 ORTHO05D002328 2.6e-135 485.3 239 100.0
MD15G1298300 Malus domestica HOM05D002156 ORTHO05D002328 6.6e-62 241.5 196 70.9
Prupe.6G219400 Prunus persica HOM05D002156 ORTHO05D002328 2.6e-50 203.0 196 60.7
RcHm_v2.0_Chr2g0108281 Rosa chinensis HOM05D002156 ORTHO05D002328 8.7e-38 161.4 199 52.8
Haze_15273 Corylus avellana HOM05D002156 ORTHO05D002328 1.5e-37 160.6 195 49.7
FAN26G1599 Fragaria x ananassa HOM05D002156 ORTHO05D002328 2.8e-36 156.4 198 49.5
FAN28G1601 Fragaria x ananassa HOM05D002156 ORTHO05D002328 2.8e-36 156.4 198 49.0
RcHm_v2.0_Chr5g0059801 Rosa chinensis HOM05D002156 ORTHO05D002328 1.1e-35 154.5 197 48.7
FvH4_1g17850 Fragaria vesca HOM05D002156 ORTHO05D002328 1.8e-35 153.7 198 48.5
FAN19G2206 Fragaria x ananassa HOM05D002156 ORTHO05D002328 2.4e-35 153.3 198 48.5
Actinidia34534 Actinidia chinensis HOM05D002156 ORTHO05D002328 3.1e-35 152.9 187 50.8
FAN23G2052 Fragaria x ananassa HOM05D002156 ORTHO05D002328 5.3e-35 152.1 198 48.5
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 9.9e-34 147.9 167 52.1
Dinv26941 Davidia involucrata HOM05D002156 ORTHO05D002328 1.7e-33 147.1 183 47.0
Lj7A108T18 Lonicera japonica HOM05D002156 ORTHO05D002328 6.4e-33 145.2 198 47.5
Oeu013327.1 Olea europaea HOM05D002156 ORTHO05D002328 2.4e-32 143.3 196 47.4
CiPaw.02G001800 Carya illinoinensis HOM05D002156 ORTHO05D002328 9.3e-32 141.4 196 44.4
Dinv04039 Davidia involucrata HOM05D002156 ORTHO05D002328 1.2e-31 141.0 183 45.4
arahy.Tifrunner.gnm1.ann1.DXU8TV Arachis hypogaea HOM05D002156 ORTHO05D002328 3.5e-31 139.4 181 45.9
Manes.12G115600 Manihot esculenta HOM05D002156 ORTHO05D002328 6.0e-31 138.7 196 43.9
Thecc.01G073700 Theobroma cacao HOM05D002156 ORTHO05D002328 7.9e-31 138.3 197 45.2
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.0e-30 137.9 164 50.0
Sed0011684 Sechium edule HOM05D002156 ORTHO05D002328 1.3e-30 137.5 179 46.9
arahy.Tifrunner.gnm1.ann1.WVVG4E Arachis hypogaea HOM05D002156 ORTHO05D002328 3.9e-30 136.0 181 45.3
Nitab4.5_0000036g0110 Nicotiana tabacum HOM05D002156 ORTHO05D002328 3.9e-30 136.0 192 44.3
Ciclev10025460m.g Citrus clementina HOM05D002156 ORTHO05D002328 8.7e-30 134.8 196 43.4
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 8.7e-30 134.8 164 49.4
TWI74G0945 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 1.9e-29 133.7 196 42.3
CANSAT80G2770 Cannabis sativa HOM05D002156 ORTHO05D002328 2.5e-29 133.3 218 43.1
Ca_24680_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 2.5e-29 133.3 163 46.6
Solyc02g064580.3 Solanum lycopersicum HOM05D002156 ORTHO05D002328 2.5e-29 133.3 188 43.1
Psat2g171800 Pisum sativum HOM05D002156 ORTHO05D002328 3.3e-29 132.9 165 45.5
PGSC0003DMG400003330 Solanum tuberosum HOM05D002156 ORTHO05D002328 7.4e-29 131.7 188 42.6
Medtr5g015280 Medicago truncatula HOM05D002156 ORTHO05D002328 9.6e-29 131.3 163 44.8
MELO3C023949.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.6e-28 130.6 187 44.4
Lalb_Chr05g0213751 Lupinus albus HOM05D002156 ORTHO05D002328 1.6e-28 130.6 183 42.6
TPR.G9332 Trifolium pratense HOM05D002156 ORTHO05D002328 1.6e-28 130.6 183 42.6
CAN.G775.6 Capsicum annuum HOM05D002156 ORTHO05D002328 2.1e-28 130.2 194 43.3
Duzib147G1396 Durio zibethinus HOM05D002156 ORTHO05D002328 2.1e-28 130.2 197 42.6
Glyma.11G047000 Glycine max HOM05D002156 ORTHO05D002328 2.1e-28 130.2 185 43.2
Sopen02g014710 Solanum pennellii HOM05D002156 ORTHO05D002328 2.1e-28 130.2 188 42.6
Atru.chr3.1024 Acer truncatum HOM05D002156 ORTHO05D002328 2.8e-28 129.8 197 41.1
CSS0028846 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.8e-28 129.8 157 49.0
Cpa.g.sc6.5 Carica papaya HOM05D002156 ORTHO05D002328 6.2e-28 128.6 191 44.5
Peaxi162Scf00449g00322 Petunia axillaris HOM05D002156 ORTHO05D002328 8.1e-28 128.3 181 42.0
Gohir.A12G077600 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.1e-27 127.9 182 44.0
VMungo1215G2868 Vigna mungo HOM05D002156 ORTHO05D002328 1.4e-27 127.5 185 41.6
Cc07_g07180 Coffea canephora HOM05D002156 ORTHO05D002328 3.1e-27 126.3 195 40.0
Migut.H00340 Erythranthe guttata HOM05D002156 ORTHO05D002328 3.1e-27 126.3 197 43.1
Phvul.002G010100 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 3.1e-27 126.3 185 42.2
Lj2g0015820 Lotus japonicus HOM05D002156 ORTHO05D002328 9.0e-27 124.8 201 40.3
COL.COLO4_11588 Corchorus olitorius HOM05D002156 ORTHO05D002328 1.2e-26 124.4 197 43.1
Duzib264G1314 Durio zibethinus HOM05D002156 ORTHO05D002328 1.5e-26 124.0 197 41.6
EL10Ac6g15612 Beta vulgaris HOM05D002156 ORTHO05D002328 4.5e-26 122.5 184 42.9
Gorai.008G083300 Gossypium raimondii HOM05D002156 ORTHO05D002328 7.6e-26 121.7 182 42.3
Rhsim10G0099000 Rhododendron simsii HOM05D002156 ORTHO05D002328 1.3e-25 120.9 173 44.5
Sc07g0000520 Simmondsia chinensis HOM05D002156 ORTHO05D002328 1.3e-25 120.9 165 44.2
Potri.007G005500 Populus trichocarpa HOM05D002156 ORTHO05D002328 2.2e-25 120.2 184 41.8
PSO541G2762 Papaver somniferum HOM05D002156 ORTHO05D002328 5.5e-24 115.5 175 40.0
Aqoxy113s001 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.2e-23 114.4 169 42.0
Aqoxy6G02572 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.2e-23 114.4 169 42.0
Sabra07G0004000 Salix brachista HOM05D002156 ORTHO05D002328 1.2e-23 114.4 185 40.5
PSO675G2996 Papaver somniferum HOM05D002156 ORTHO05D002328 2.7e-23 113.2 183 37.7
CsaV3_3G032390 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.6e-23 112.5 190 40.5
Eucgr.H02313 Eucalyptus grandis HOM05D002156 ORTHO05D002328 7.9e-23 111.7 197 40.6
HanXRQChr10g0293211 Helianthus annuus HOM05D002156 ORTHO05D002328 4.3e-21 105.9 181 39.2
vmacro05417 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 4.3e-21 105.9 224 38.4
SGA_v2.0_scaffold15G07468 Striga asiatica HOM05D002156 ORTHO05D002328 5.6e-21 105.5 159 40.3
Nn5g30618 Nelumbo nucifera HOM05D002156 ORTHO05D002328 1.3e-20 104.4 165 38.8
Aa31LG1G16160 Aethionema arabicum HOM05D002156 ORTHO05D002328 3.7e-20 102.8 164 40.2
THA.LOC104821209 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.1e-19 101.3 180 37.2
CANSAT80G2385 Cannabis sativa HOM05D002156 ORTHO05D002328 5.3e-19 99.0 161 43.5
SalBow3G0792 Salvia bowleyana HOM05D002156 ORTHO05D002328 5.3e-19 99.0 195 35.9
Thhalv10004091m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 6.9e-19 98.6 198 36.9
Lsat_1_v5_gn_5_106741 Lactuca sativa HOM05D002156 ORTHO05D002328 6.9e-19 98.6 194 36.1
DCAR_025812 Daucus carota HOM05D003138 ORTHO05D003789 1.5e-18 97.4 185 38.9
ECA234G4580 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.5e-18 97.4 185 35.7
Gohir.D12G075800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.5e-18 97.4 116 45.7
AL8G43690 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 7.6e-18 95.1 183 35.5
CARHR279980 Cardamine hirsuta HOM05D002156 ORTHO05D002328 1.7e-17 94.0 183 36.6
Sp2g29040 Schrenkiella parvula HOM05D002156 ORTHO05D002328 1.7e-17 94.0 180 36.7
Glyma.01G194800 Glycine max HOM05D002156 ORTHO05D002328 4.9e-17 92.4 71 59.2
AT5G67610 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 1.9e-16 90.5 181 34.3
A06p32810 Brassica napus HOM05D002156 ORTHO05D002328 4.2e-16 89.4 180 35.0
TAR381G0066 Trochodendron aralioides HOM05D002156 ORTHO05D002328 4.2e-16 89.4 71 60.6
C03p59660 Brassica napus HOM05D002156 ORTHO05D002328 7.1e-16 88.6 183 34.4
BcaNung05870 Brassica carinata HOM05D002156 ORTHO05D002328 9.3e-16 88.2 183 34.4
AT3G49840 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 1.0e-14 84.7 196 33.2
BraA06t26213Z Brassica rapa HOM05D002156 ORTHO05D002328 2.3e-14 83.6 173 33.5
Carub.0008s2686 Capsella rubella HOM05D002156 ORTHO05D002328 3.9e-14 82.8 228 28.9
BolC3t18228H Brassica oleracea HOM05D002156 ORTHO05D002328 8.7e-14 81.6 173 33.5
Nitab4.5_0008452g0010 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.5e-13 80.9 71 53.5
Carub.0007s0804 Capsella rubella HOM05D002156 ORTHO05D002328 1.9e-13 80.5 160 36.2
AL5G29840 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 2.5e-13 80.1 178 34.8
Lj5g0019951 Lotus japonicus HOM05D002156 ORTHO05D002328 2.5e-13 80.1 71 52.1
Carub.0007s0803 Capsella rubella HOM05D002156 ORTHO05D002328 4.3e-13 79.3 171 34.5
Carub.0005s1619 Capsella rubella HOM05D002156 ORTHO05D002328 5.7e-13 79.0 187 31.6
ATR0739G161 Amborella trichopoda HOM05D002156 ORTHO05D002328 9.7e-13 78.2 170 33.5
CARHR158910 Cardamine hirsuta HOM05D002156 ORTHO05D002328 1.3e-12 77.8 164 35.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-12 76.3 141 42.6
Thhalv10010344m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 1.8e-11 73.9 179 34.6
Hund13956 Selenicereus undatus HOM05D002156 ORTHO05D002328 3.1e-11 73.2 206 32.5
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 1.5e-10 70.9 114 36.0
Zm00001eb404700 Zea mays HOM05D002156 ORTHO05D002328 4.5e-10 69.3 68 45.6
SEGI_38521 Sequoiadendron giganteum HOM05D002156 ORTHO05D002328 7.7e-10 68.6 158 31.6
Os03g0430000 Oryza sativa ssp. japonica HOM05D002156 ORTHO05D002328 1.0e-09 68.2 117 32.5
Pp3c4_2110 Physcomitrium patens HOM05D002156 ORTHO05D002328 2.9e-09 66.6 155 34.2
PGR102G2375 Punica granatum HOM05D002156 ORTHO05D002328 3.8e-09 66.2 172 33.1
SEGI_22161 Sequoiadendron giganteum HOM05D002156 ORTHO05D002328 5.0e-09 65.9 70 47.1
unitig_60.g25524 Utricularia gibba HOM05D002156 ORTHO05D002328 1.1e-08 64.7 70 41.4
Zm00001eb021030 Zea mays HOM05D002156 ORTHO05D002328 2.5e-08 63.5 68 41.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.2e-08 62.8 142 35.2
AL7G19080 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 5.5e-08 62.4 132 34.1
Nitab4.5_0010326g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 5.5e-08 62.4 87 40.2
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 7.2e-08 62.0 70 42.9
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.2e-07 61.2 70 40.0
Pp3c12_14610 Physcomitrium patens HOM05D002156 ORTHO05D002328 1.2e-07 61.2 155 34.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.6e-07 59.7 142 35.2
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.6e-07 59.7 70 40.0
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 3.6e-07 59.7 70 40.0
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 4.6e-07 59.3 70 40.0
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 4.6e-07 59.3 70 37.1
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 6.1e-07 58.9 70 40.0
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 6.1e-07 58.9 70 40.0
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 6.1e-07 58.9 70 38.6
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 6.1e-07 58.9 70 38.6
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 6.1e-07 58.9 70 38.6
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 7.9e-07 58.5 70 38.6
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 7.9e-07 58.5 70 38.6
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 7.9e-07 58.5 70 38.6
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 1.0e-06 58.2 69 40.6
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 1.0e-06 58.2 70 41.4
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 1.4e-06 57.8 70 38.6
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 1.8e-06 57.4 70 38.6
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 2.3e-06 57.0 69 42.0
Oeu014253.2 Olea europaea HOM05D002156 ORTHO05D002328 2.3e-06 57.0 53 56.6
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 3.0e-06 56.6 70 40.0
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 3.9e-06 56.2 69 40.6
Dinv25407 Davidia involucrata HOM05D002156 ORTHO05D002328 5.1e-06 55.8 70 40.0
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 5.1e-06 55.8 70 38.6
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 5.1e-06 55.8 69 37.7
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 6.7e-06 55.5 69 39.1
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 6.7e-06 55.5 70 35.7
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 6.7e-06 55.5 70 40.0
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 8.8e-06 55.1 70 37.1
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 8.8e-06 55.1 70 37.1
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 8.8e-06 55.1 70 38.6
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 8.8e-06 55.1 70 37.1


User provided reference genes

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