Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 2300.8 1257 100.0
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1770.4 1258 76.1
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1738.0 1257 74.1
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1730.3 1257 73.8
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1724.5 1257 74.1
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1633.6 1188 74.9
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1592.0 1261 66.6
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1571.6 1261 65.6
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1563.5 1259 66.8
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1471.1 1267 62.0
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1463.0 1188 69.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1448.0 936 84.4
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1442.6 1268 61.3
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1418.3 1259 60.0
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1417.5 1262 60.5
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1408.3 1268 60.1
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1391.7 1260 59.3
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1384.4 1257 59.1
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1382.1 1255 61.8
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1374.8 1261 59.2
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1368.2 1259 58.1
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1368.2 1259 58.1
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1367.1 1267 60.4
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1362.4 1263 58.3
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1361.3 1259 57.9
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1354.0 1262 58.2
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1350.9 1264 59.0
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1349.7 1262 57.8
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1345.5 1271 57.9
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1342.8 1268 57.6
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1340.9 1265 57.3
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1339.3 1283 57.1
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1330.5 1265 56.9
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1320.1 1258 57.0
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1318.5 1270 56.3
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1317.0 1259 56.8
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1301.2 1259 58.2
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1299.3 1264 56.2
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1290.4 1256 56.0
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1290.0 1247 56.1
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1284.2 1258 55.0
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1280.4 1260 56.1
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1274.2 1104 62.0
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1265.8 1254 55.3
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1265.8 1261 55.3
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1262.3 1259 54.6
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1245.3 1286 53.5
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1243.4 1267 53.4
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1231.9 1257 56.0
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1231.1 1265 53.9
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1227.2 1261 52.6
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1227.2 1294 52.9
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1223.4 1269 51.9
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1219.9 1251 54.7
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1219.5 1266 51.5
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1218.8 1263 53.0
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1218.0 1262 54.4
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1215.7 1265 55.6
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1211.4 1266 51.5
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1211.1 1013 63.6
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1210.3 1124 59.3
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1209.9 1266 55.3
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1209.1 1261 53.1
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1202.2 1259 52.4
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1194.9 1265 53.5
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1187.9 1267 50.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1186.0 1272 50.9
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1182.9 1186 56.7
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1182.2 1273 51.0
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1181.4 1268 52.0
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1174.1 1261 51.3
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1172.1 1266 51.5
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1166.0 1256 51.3
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1157.9 1250 53.4
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1143.3 1270 52.4
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1141.3 1269 52.6
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1138.3 1250 51.6
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1134.4 1267 52.6
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1132.9 1245 51.6
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1129.0 1262 52.6
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1119.4 949 64.5
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1118.2 1276 50.6
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1114.8 1269 49.2
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1108.6 1317 49.1
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1108.2 1251 50.4
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1093.2 1274 50.0
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1081.6 1270 50.9
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.3e-307 1059.3 873 64.1
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.8e-296 1023.1 1257 47.3
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 1.9e-293 1013.1 1046 51.6
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.6e-292 1010.0 1220 47.9
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 6.0e-263 911.8 980 51.6
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 3.8e-249 865.9 853 57.9
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 6.4e-233 812.0 1043 47.6
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.3e-229 799.3 975 48.7
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.8e-222 777.3 1229 40.3
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 4.3e-221 772.7 1109 41.8
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.2e-217 760.4 1274 38.6
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 3.0e-214 750.0 906 47.5
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 3.6e-183 646.7 808 45.5
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.3e-174 617.5 903 40.0
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.7e-169 601.3 1117 35.6
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.3e-166 590.9 771 43.6
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.9e-164 583.2 578 53.3
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.0e-154 551.2 870 38.7
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.1e-147 528.9 427 71.9
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.8e-142 511.5 640 44.8
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.1e-127 461.5 454 55.7
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.4e-123 446.8 653 41.2
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 2.5e-107 394.8 367 58.6
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 7.9e-98 363.2 236 76.3
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 7.7e-93 346.7 360 55.6
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 5.0e-92 344.0 353 56.7
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.1e-90 338.6 349 56.2
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 8.8e-89 333.2 381 46.2
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.5e-88 331.6 640 34.7
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 3.8e-84 317.8 376 51.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 6.3e-79 300.4 482 36.1
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 1.6e-74 285.8 398 42.5
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.5e-67 261.9 474 34.2
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-60 238.4 336 37.2
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.8e-49 202.6 296 42.6
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.2e-47 195.7 323 35.3
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 3.9e-44 184.9 169 58.0
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.2e-32 146.7 313 38.0
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 3.4e-24 118.6 129 49.6
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 4.4e-24 118.2 120 50.8
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.3e-23 116.7 203 39.4
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 4.1e-22 111.7 120 50.0
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 7.1e-22 110.9 120 49.2
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.2e-21 110.2 361 28.8
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.7e-15 89.7 119 40.3
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 2.7e-13 82.4 61 63.9
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 3.2e-06 58.9 298 21.5


User provided reference genes

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