Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 3.4e-46 188.0 94 100.0
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 2.2e-29 132.1 90 78.9
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 7.6e-22 107.1 57 94.7
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 1.7e-21 105.9 71 74.6
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 2.9e-21 105.1 81 65.4
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 3.8e-21 104.8 81 66.7
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 3.2e-20 101.7 78 65.4
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 4.2e-20 101.3 81 61.7
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 9.3e-20 100.1 71 70.4
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 3.5e-19 98.2 78 62.8
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.3e-18 96.3 78 64.1
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 1.8e-18 95.9 80 62.5
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 6.7e-18 94.0 80 66.2
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 8.7e-18 93.6 69 71.0
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 2.5e-17 92.0 59 78.0
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 7.4e-17 90.5 88 60.2
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 9.7e-17 90.1 71 67.6
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 1.3e-16 89.7 59 76.3
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 1.6e-16 89.4 59 72.9
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 1.6e-16 89.4 96 55.2
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 6.3e-16 87.4 73 64.4
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.1e-15 86.7 81 56.8
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 1.1e-15 86.7 70 58.6
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.4e-15 85.5 87 55.2
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 2.4e-15 85.5 78 55.1
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 3.1e-15 85.1 71 62.0
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 4.1e-15 84.7 70 62.9
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 4.1e-15 84.7 81 56.8
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.9e-15 84.0 80 53.8
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 9.0e-15 83.6 71 63.4
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 9.0e-15 83.6 65 64.6
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 9.0e-15 83.6 91 51.6
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.2e-14 83.2 87 56.3
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.2e-14 83.2 87 56.3
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 1.2e-14 83.2 73 58.9
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 2.0e-14 82.4 58 70.7
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 2.0e-14 82.4 88 47.7
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.0e-14 82.4 58 69.0
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 3.4e-14 81.6 69 58.0
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 5.9e-14 80.9 99 50.5
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 1.0e-13 80.1 69 59.4
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 1.3e-13 79.7 81 54.3
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 1.7e-13 79.3 69 56.5
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 1.7e-13 79.3 90 54.4
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 2.9e-13 78.6 69 56.5
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 5.0e-13 77.8 69 59.4
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 5.0e-13 77.8 59 67.8
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 5.0e-13 77.8 67 56.7
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 8.5e-13 77.0 90 53.3
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 8.5e-13 77.0 90 53.3
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 8.5e-13 77.0 90 53.3
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 1.1e-12 76.6 59 67.8
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 1.4e-12 76.3 71 53.5
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 1.9e-12 75.9 55 67.3
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 2.5e-12 75.5 86 47.7
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 2.5e-12 75.5 87 50.6
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 3.2e-12 75.1 66 56.1
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 3.2e-12 75.1 66 56.1
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 3.2e-12 75.1 57 63.2
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 5.5e-12 74.3 56 62.5
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 5.5e-12 74.3 63 58.7
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 7.2e-12 73.9 66 54.5
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 7.2e-12 73.9 57 61.4
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 9.4e-12 73.6 82 48.8
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 9.4e-12 73.6 66 56.1
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 9.4e-12 73.6 57 66.7
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 1.2e-11 73.2 58 62.1
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 1.2e-11 73.2 57 61.4
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 1.6e-11 72.8 49 75.5
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 1.6e-11 72.8 62 62.9
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 2.1e-11 72.4 57 61.4
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 2.7e-11 72.0 62 62.9
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 6.1e-11 70.9 57 61.4
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 7.9e-11 70.5 57 61.4
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 7.9e-11 70.5 57 66.7
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 1.0e-10 70.1 71 52.1
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 1.4e-10 69.7 59 61.0
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 1.4e-10 69.7 61 62.3
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 1.4e-10 69.7 58 62.1
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 1.8e-10 69.3 57 59.6
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 1.8e-10 69.3 82 47.6
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 2.3e-10 68.9 57 59.6
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 2.3e-10 68.9 57 59.6
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 2.3e-10 68.9 57 59.6
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 3.0e-10 68.6 52 61.5
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 3.9e-10 68.2 51 64.7
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 5.1e-10 67.8 57 57.9
Lj6g0007185 Lotus japonicus HOM05D007513 ORTHO05D008148 5.1e-10 67.8 57 57.9
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 6.7e-10 67.4 57 56.1
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 1.1e-09 66.6 61 54.1
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 1.5e-09 66.2 55 60.0
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 2.0e-09 65.9 57 56.1
Lj6g0018022 Lotus japonicus HOM05D007513 ORTHO05D008148 2.0e-09 65.9 55 58.2
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 2.0e-09 65.9 59 52.5
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 4.3e-09 64.7 57 56.1
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 4.3e-09 64.7 58 56.9
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 4.3e-09 64.7 61 52.5
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 9.7e-09 63.5 70 47.1
Gohir.A02G152300 Gossypium hirsutum HOM05D045493 ORTHO05D008148 6.3e-08 60.8 114 37.7
SEGI_38697 Sequoiadendron giganteum HOM05D007513 ORTHO05D008148 2.4e-07 58.9 52 55.8
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 4.1e-07 58.2 46 63.0
Sopen03g007910 Solanum pennellii HOM05D007513 ORTHO05D008148 9.1e-07 57.0 46 60.9
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 1.5e-06 56.2 55 52.7
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 2.6e-06 55.5 44 63.6
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 3.4e-06 55.1 49 55.1


User provided reference genes

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