Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 4.4e-111 404.8 235 100.0
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 8.1e-97 357.5 238 88.7
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.4e-64 250.4 244 67.2
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 9.4e-45 184.5 237 54.9
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.0e-43 181.0 248 52.4
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.3e-41 171.8 237 51.5
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.2e-41 171.4 251 49.0
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 5.3e-40 168.7 241 51.0
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 5.9e-39 165.2 235 49.8
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.9e-39 165.2 235 49.8
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.2e-34 151.0 244 49.2
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.5e-34 150.6 250 47.2
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 4.4e-34 149.1 243 48.1
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 8.3e-33 144.8 245 50.2
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.1e-32 144.4 242 49.6
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.4e-32 143.3 243 49.0
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.9e-31 138.7 240 49.6
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 5.9e-31 138.7 235 46.4
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.7e-31 138.3 240 48.8
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.7e-31 138.3 240 49.6
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.0e-30 137.9 237 43.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.1e-29 134.4 248 44.8
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.5e-29 134.0 249 45.8
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 2.5e-29 133.3 238 45.4
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 4.2e-29 132.5 245 43.3
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 7.2e-29 131.7 245 43.3
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 6.1e-28 128.6 244 44.7
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 8.0e-28 128.3 237 45.6
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.0e-27 127.9 235 44.3
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.4e-27 127.5 244 42.6
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 4.0e-27 125.9 244 41.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.2e-27 125.6 244 42.2
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 8.8e-27 124.8 236 44.1
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-26 124.4 235 42.6
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 2.6e-26 123.2 240 44.6
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 3.4e-26 122.9 247 42.5
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 3.4e-26 122.9 243 40.7
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 3.4e-26 122.9 245 41.6
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.4e-26 122.5 239 42.7
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.7e-26 122.1 242 43.0
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-25 120.6 242 43.0
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 2.2e-25 120.2 243 42.0
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.7e-25 119.4 243 42.4
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 6.3e-25 118.6 238 44.5
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 8.3e-25 118.2 242 41.3
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 8.3e-25 118.2 245 43.3
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 8.3e-25 118.2 239 42.3
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 8.3e-25 118.2 237 40.9
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.4e-24 117.5 239 42.3
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-24 117.5 238 41.6
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 4.1e-24 115.9 247 42.1
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 3.5e-23 112.8 253 37.5
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.5e-23 112.5 119 54.6
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 5.9e-23 112.1 244 41.8
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 5.9e-23 112.1 235 41.3
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.9e-23 112.1 245 40.4
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 5.9e-23 112.1 237 40.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.0e-22 111.3 120 58.3
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.3e-22 110.9 125 54.4
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.7e-22 110.5 232 40.9
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.9e-21 107.1 239 41.0
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.5e-21 106.7 255 39.2
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.3e-21 105.9 245 40.0
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 4.3e-21 105.9 244 39.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 4.3e-21 105.9 245 39.6
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 5.6e-21 105.5 242 40.1
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 7.3e-21 105.1 245 36.7
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 9.5e-21 104.8 245 38.0
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 9.5e-21 104.8 238 38.7
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 9.5e-21 104.8 236 39.8
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.6e-20 104.0 233 36.5
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 6.1e-20 102.1 128 50.8
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.1e-20 102.1 119 52.9
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.0e-20 101.7 232 39.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 8.0e-20 101.7 238 39.1
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 8.0e-20 101.7 238 39.1
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.4e-19 100.9 232 38.8
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 3.0e-19 99.8 235 39.1
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 5.2e-19 99.0 238 38.7
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.5e-18 97.4 248 37.9
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.6e-18 96.7 236 39.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.6e-18 96.7 185 42.2
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 4.4e-18 95.9 236 39.4
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 7.5e-18 95.1 248 37.9
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 9.8e-18 94.7 233 41.6
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 9.8e-18 94.7 236 38.6
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.3e-17 94.4 119 52.1
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.7e-17 92.8 241 36.9
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 6.4e-17 92.0 119 49.6
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.4e-17 92.0 234 38.5
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 8.3e-17 91.7 243 37.9
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.4e-16 90.9 120 51.7
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 3.2e-16 89.7 211 41.7
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.2e-16 89.7 235 34.5
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 7.0e-16 88.6 120 47.5
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-15 87.8 157 44.6
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-15 87.8 120 46.7
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.6e-15 87.4 236 36.0
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.6e-15 87.4 114 51.8
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.6e-15 87.4 133 48.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-15 87.0 239 36.8
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-15 87.0 239 36.8
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.0e-15 87.0 118 47.5
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.7e-15 86.7 234 34.6
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 3.5e-15 86.3 236 35.2
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 3.5e-15 86.3 120 46.7
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 5.9e-15 85.5 118 47.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 5.9e-15 85.5 118 46.6
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 5.9e-15 85.5 118 47.5
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 5.9e-15 85.5 118 47.5
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 5.9e-15 85.5 118 46.6
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.8e-15 85.1 114 50.9
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 7.8e-15 85.1 228 36.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.0e-14 84.7 119 47.1
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.0e-14 84.7 118 46.6
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.3e-14 84.3 231 40.7
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.3e-14 84.3 120 45.8
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.7e-14 84.0 120 46.7
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 2.3e-14 83.6 120 45.0
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 2.3e-14 83.6 120 45.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 3.9e-14 82.8 123 45.5
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 3.9e-14 82.8 216 39.4
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 6.6e-14 82.0 261 43.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 8.6e-14 81.6 119 47.1
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 8.6e-14 81.6 119 46.2
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 8.6e-14 81.6 119 46.2
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 8.6e-14 81.6 119 46.2
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 8.6e-14 81.6 119 46.2
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.5e-13 80.1 233 32.6
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 3.3e-13 79.7 119 45.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 3.3e-13 79.7 235 33.6
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 5.6e-13 79.0 119 45.4
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 7.3e-13 78.6 143 42.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.2e-12 77.8 250 34.4
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.6e-12 77.4 111 45.9
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.6e-12 77.4 240 32.9
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.6e-12 77.4 162 38.9
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 2.8e-12 76.6 258 31.4
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 3.6e-12 76.3 126 43.7
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.2e-12 75.5 170 41.2
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 8.0e-12 75.1 120 40.8
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 6.8e-11 72.0 257 34.2
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.9e-11 71.6 44 77.3
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.2e-10 71.2 117 45.3
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.5e-10 70.9 158 36.7
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-10 70.5 145 37.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 3.4e-10 69.7 162 35.8
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.4e-10 69.7 125 40.8
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 7.5e-10 68.6 239 33.9
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.2e-09 67.0 239 32.6
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 2.2e-09 67.0 233 28.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 4.9e-09 65.9 58 56.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 8.3e-09 65.1 239 32.6
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.2e-08 63.2 113 38.1
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.2e-08 63.2 238 31.5
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 5.4e-08 62.4 141 34.8
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 7.0e-08 62.0 244 33.2
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.6e-07 59.3 62 46.8
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.6e-07 59.3 60 51.7
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.0e-06 58.2 111 36.0
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.3e-06 57.8 123 35.0
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.3e-06 57.8 116 35.3
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.3e-06 57.8 95 42.1
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.0e-06 56.6 116 34.5


User provided reference genes

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