Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1177400 Malus domestica HOM05D004633 ORTHO05D005503 3.5e-115 418.3 211 100.0
MD15G1287200 Malus domestica HOM05D004633 ORTHO05D005503 5.6e-65 251.5 228 64.9
Prupe.6G230700 Prunus persica HOM05D004633 ORTHO05D005503 3.0e-58 229.2 225 58.2
FAN23G1966 Fragaria x ananassa HOM05D004633 ORTHO05D005503 1.5e-54 216.9 223 56.1
FvH4_1g16470 Fragaria vesca HOM05D004633 ORTHO05D005503 6.5e-53 211.5 223 55.2
FAN19G2847 Fragaria x ananassa HOM05D004633 ORTHO05D005503 6.5e-53 211.5 223 55.2
RcHm_v2.0_Chr2g0106351 Rosa chinensis HOM05D004633 ORTHO05D005503 6.5e-53 211.5 225 56.0
FAN28G2116 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.4e-53 211.1 223 54.7
FAN26G1576 Fragaria x ananassa HOM05D004633 ORTHO05D005503 3.2e-52 209.1 223 54.3
FAN28G1894 Fragaria x ananassa HOM05D004633 ORTHO05D005503 3.5e-51 205.7 198 57.1
Ciclev10025630m.g Citrus clementina HOM05D004633 ORTHO05D005503 1.5e-46 190.3 216 51.9
CiPaw.01G014400 Carya illinoinensis HOM05D004633 ORTHO05D005503 3.4e-46 189.1 210 51.0
GSVIVG01022068001 Vitis vinifera HOM05D004633 ORTHO05D005503 3.4e-46 189.1 200 53.5
Haze_15364 Corylus avellana HOM05D004633 ORTHO05D005503 5.0e-45 185.3 203 51.7
SGA_v2.0_scaffold10G05122 Striga asiatica HOM05D004633 ORTHO05D005503 1.4e-44 183.7 219 49.3
Cfa004047 Carpinus fangiana HOM05D004633 ORTHO05D005503 1.9e-44 183.3 233 47.6
MELO3C024784.2 Cucumis melo HOM05D004633 ORTHO05D005503 7.1e-44 181.4 225 48.0
Dinv26852 Davidia involucrata HOM05D004633 ORTHO05D005503 9.3e-44 181.0 221 49.3
Gohir.A02G155700 Gossypium hirsutum HOM05D004633 ORTHO05D005503 9.3e-44 181.0 219 48.9
Sed0006372 Sechium edule HOM05D004633 ORTHO05D005503 9.3e-44 181.0 198 52.5
AT5G67220 Arabidopsis thaliana HOM05D004633 ORTHO05D005503 1.2e-43 180.6 221 48.9
Carub.0008s2729 Capsella rubella HOM05D004633 ORTHO05D005503 2.1e-43 179.9 201 51.2
Duzib147G0002 Durio zibethinus HOM05D004633 ORTHO05D005503 2.1e-43 179.9 221 49.8
CARHR280410 Cardamine hirsuta HOM05D004633 ORTHO05D005503 2.7e-43 179.5 221 48.0
Gorai.003G026500 Gossypium raimondii HOM05D004633 ORTHO05D005503 3.5e-43 179.1 184 54.3
Rhsim08G0098400 Rhododendron simsii HOM05D004633 ORTHO05D005503 3.5e-43 179.1 209 49.8
THA.LOC104821245 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 3.5e-43 179.1 218 48.2
CANSAT25G1160 Cannabis sativa HOM05D004633 ORTHO05D005503 4.6e-43 178.7 185 54.6
Thhalv10004143m.g Eutrema salsugineum HOM05D004633 ORTHO05D005503 4.6e-43 178.7 224 47.8
Atru.chr3.268 Acer truncatum HOM05D004633 ORTHO05D005503 6.1e-43 178.3 160 56.9
MSTRG.3439 Avicennia marina HOM05D004633 ORTHO05D005503 6.1e-43 178.3 199 50.3
PGR102G1926 Punica granatum HOM05D004633 ORTHO05D005503 6.1e-43 178.3 218 47.2
BolC7t42968H Brassica oleracea HOM05D004633 ORTHO05D005503 1.8e-42 176.8 219 47.9
Aa31LG1G15750 Aethionema arabicum HOM05D004633 ORTHO05D005503 2.3e-42 176.4 218 48.2
CsaV3_2G035640 Cucumis sativus L. HOM05D004633 ORTHO05D005503 2.3e-42 176.4 191 52.4
Sabra07G0042200 Salix brachista HOM05D004633 ORTHO05D005503 2.3e-42 176.4 214 49.1
QL06p040312 Quercus lobata HOM05D004633 ORTHO05D005503 3.0e-42 176.0 204 52.0
AL8G44120 Arabidopsis lyrata HOM05D004633 ORTHO05D005503 3.9e-42 175.6 186 52.2
BcaB02g09941 Brassica carinata HOM05D004633 ORTHO05D005503 3.9e-42 175.6 204 49.5
Gohir.D03G024900 Gossypium hirsutum HOM05D004633 ORTHO05D005503 3.9e-42 175.6 184 53.8
Nn1g04752 Nelumbo nucifera HOM05D004633 ORTHO05D005503 3.9e-42 175.6 213 47.9
Sed0019372 Sechium edule HOM05D004633 ORTHO05D005503 3.9e-42 175.6 205 50.2
THA.LOC104819242 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 3.9e-42 175.6 188 53.2
Manes.13G119720 Manihot esculenta HOM05D004633 ORTHO05D005503 5.1e-42 175.3 155 58.7
Manes.12G107300 Manihot esculenta HOM05D004633 ORTHO05D005503 6.7e-42 174.9 224 49.6
Sp2g29450 Schrenkiella parvula HOM05D004633 ORTHO05D005503 6.7e-42 174.9 188 52.1
Aqoxy5G01172 Aquilegia oxysepala HOM05D004633 ORTHO05D005503 1.5e-41 173.7 186 51.6
Hma1.2p1_0017F.1_g011780 Hydrangea macrophylla HOM05D004633 ORTHO05D005503 1.5e-41 173.7 155 58.7
VMungo0251G3622 Vigna mungo HOM05D004633 ORTHO05D005503 1.5e-41 173.7 155 58.1
A07p16750 Brassica napus HOM05D004633 ORTHO05D005503 1.9e-41 173.3 199 49.2
BraA07t29400Z Brassica rapa HOM05D004633 ORTHO05D005503 1.9e-41 173.3 199 49.2
ClCG02G008020 Citrullus lanatus HOM05D004633 ORTHO05D005503 2.5e-41 172.9 219 46.6
C07p24480 Brassica napus HOM05D004633 ORTHO05D005503 3.3e-41 172.6 214 48.1
AUR62003922 Chenopodium quinoa HOM05D004633 ORTHO05D005503 3.3e-41 172.6 183 53.6
TWI73G0624 Tripterygium wilfordii HOM05D004633 ORTHO05D005503 3.3e-41 172.6 152 59.2
vmacro17967 Vaccinium macrocarpon HOM05D004633 ORTHO05D005503 3.3e-41 172.6 185 53.0
BolC9t54006H Brassica oleracea HOM05D004633 ORTHO05D005503 4.3e-41 172.2 179 53.1
BcaC04g23204 Brassica carinata HOM05D004633 ORTHO05D005503 5.7e-41 171.8 179 53.1
C09p11170 Brassica napus HOM05D004633 ORTHO05D005503 5.7e-41 171.8 182 52.7
Sopen03g008320 Solanum pennellii HOM05D004633 ORTHO05D005503 7.4e-41 171.4 182 53.3
Actinidia16468 Actinidia chinensis HOM05D004633 ORTHO05D005503 9.7e-41 171.0 210 51.0
AUR62038236 Chenopodium quinoa HOM05D004633 ORTHO05D005503 9.7e-41 171.0 183 53.0
Eucgr.L01089 Eucalyptus grandis HOM05D004633 ORTHO05D005503 9.7e-41 171.0 181 51.9
Peaxi162Scf00365g00413 Petunia axillaris HOM05D004633 ORTHO05D005503 9.7e-41 171.0 158 58.2
Phvul.003G241100 Phaseolus vulgaris HOM05D004633 ORTHO05D005503 9.7e-41 171.0 155 56.8
TAR376G0286 Trochodendron aralioides HOM05D004633 ORTHO05D005503 9.7e-41 171.0 202 48.5
BcaC06g34804 Brassica carinata HOM05D004633 ORTHO05D005503 1.3e-40 170.6 214 48.1
CSS0046694 Camellia sinensis var. sinensis HOM05D004633 ORTHO05D005503 1.3e-40 170.6 154 59.7
EL10Ac6g15705 Beta vulgaris HOM05D004633 ORTHO05D005503 2.2e-40 169.9 154 58.4
Potri.007G047300 Populus trichocarpa HOM05D004633 ORTHO05D005503 2.8e-40 169.5 214 49.1
Solyc03g044270.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 2.8e-40 169.5 182 52.7
Thecc.01G061800 Theobroma cacao HOM05D004633 ORTHO05D005503 2.8e-40 169.5 155 58.1
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 3.7e-40 169.1 181 51.9
BraA09t36596Z Brassica rapa HOM05D004633 ORTHO05D005503 4.8e-40 168.7 176 52.3
Migut.L00177 Erythranthe guttata HOM05D004633 ORTHO05D005503 4.8e-40 168.7 198 49.0
Ca_22131_v3 Cicer arietinum L. HOM05D004633 ORTHO05D005503 6.3e-40 168.3 151 58.3
BcaB04g20070 Brassica carinata HOM05D004633 ORTHO05D005503 1.1e-39 167.5 182 51.1
COL.COLO4_11464 Corchorus olitorius HOM05D004633 ORTHO05D005503 1.1e-39 167.5 203 48.8
Lsat_1_v5_gn_3_90261 Lactuca sativa HOM05D004633 ORTHO05D005503 1.1e-39 167.5 189 50.8
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 1.1e-39 167.5 177 52.0
Dinv30022 Davidia involucrata HOM05D004633 ORTHO05D005503 1.4e-39 167.2 153 58.2
Nitab4.5_0007370g0010 Nicotiana tabacum HOM05D004633 ORTHO05D005503 1.4e-39 167.2 182 50.5
arahy.Tifrunner.gnm1.ann1.H6KR5I Arachis hypogaea HOM05D004633 ORTHO05D005503 1.8e-39 166.8 180 51.7
arahy.Tifrunner.gnm1.ann1.ZUJJ2F Arachis hypogaea HOM05D004633 ORTHO05D005503 1.8e-39 166.8 180 51.7
Lj4g0002857 Lotus japonicus HOM05D004633 ORTHO05D005503 2.4e-39 166.4 154 55.8
Solyc02g093060.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 2.4e-39 166.4 185 49.7
Cc07_g06290 Coffea canephora HOM05D004633 ORTHO05D005503 3.1e-39 166.0 182 50.5
Sopen02g037630 Solanum pennellii HOM05D004633 ORTHO05D005503 3.1e-39 166.0 197 47.2
CAN.G370.28 Capsicum annuum HOM05D004633 ORTHO05D005503 4.1e-39 165.6 192 49.5
HanXRQChr15g0490881 Helianthus annuus HOM05D004633 ORTHO05D005503 4.1e-39 165.6 174 50.6
ECA246G0986 Erigeron canadensis HOM05D004633 ORTHO05D005503 5.3e-39 165.2 183 52.5
Lsat_1_v5_gn_4_164460 Lactuca sativa HOM05D004633 ORTHO05D005503 6.9e-39 164.9 182 49.5
Psat4g085040 Pisum sativum HOM05D004633 ORTHO05D005503 1.2e-38 164.1 150 56.0
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 1.2e-38 164.1 150 57.3
PGSC0003DMG400024962 Solanum tuberosum HOM05D004633 ORTHO05D005503 1.2e-38 164.1 197 46.7
TPR.G14594 Trifolium pratense HOM05D004633 ORTHO05D005503 1.5e-38 163.7 164 54.3
HanXRQChr11g0328291 Helianthus annuus HOM05D004633 ORTHO05D005503 2.0e-38 163.3 151 56.3
Zm00001eb227810 Zea mays HOM05D004633 ORTHO05D005503 2.0e-38 163.3 158 53.8
Nitab4.5_0003962g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 4.5e-38 162.2 145 57.2
Nitab4.5_0000929g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 7.7e-38 161.4 195 46.7
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 1.0e-37 161.0 147 57.1
Glyma.05G096300 Glycine max HOM05D004633 ORTHO05D005503 1.0e-37 161.0 149 56.4
Glyma.17G169000 Glycine max HOM05D004633 ORTHO05D005503 1.7e-37 160.2 151 56.3
A09p09480 Brassica napus HOM05D004633 ORTHO05D005503 2.2e-37 159.8 150 54.7
PGSC0003DMG400006483 Solanum tuberosum HOM05D004633 ORTHO05D005503 2.9e-37 159.5 205 47.3
Lalb_Chr05g0226241 Lupinus albus HOM05D004633 ORTHO05D005503 3.8e-37 159.1 154 53.2
HPP92_012974 Vanilla planifolia HOM05D004633 ORTHO05D005503 3.8e-37 159.1 156 53.2
HanXRQChr11g0348441 Helianthus annuus HOM05D004633 ORTHO05D005503 5.0e-37 158.7 241 42.3
Medtr4g094905 Medicago truncatula HOM05D004633 ORTHO05D005503 5.0e-37 158.7 151 55.0
Os06g0712900 Oryza sativa ssp. japonica HOM05D004633 ORTHO05D005503 5.0e-37 158.7 176 48.9
ATR0001G042 Amborella trichopoda HOM05D004633 ORTHO05D005503 1.0e-34 151.0 154 53.2
SHI29406 Sapria himalayana HOM05D004633 ORTHO05D005503 1.0e-34 151.0 155 51.0
Cpa.g.sc55.107 Carica papaya HOM05D004633 ORTHO05D005503 3.9e-34 149.1 201 47.3
SEGI_29602 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 3.9e-34 149.1 146 54.8
HanXRQChr15g0473611 Helianthus annuus HOM05D004633 ORTHO05D005503 1.7e-32 143.7 146 54.1
SalBow5G0679 Salvia bowleyana HOM05D004633 ORTHO05D005503 4.8e-32 142.1 196 43.4
SMO169G0138 Selaginella moellendorffii HOM05D004633 ORTHO05D005503 6.3e-32 141.7 161 47.8
Pp3c3_25920 Physcomitrium patens HOM05D004633 ORTHO05D005503 2.4e-31 139.8 142 51.4
ECA246G1233 Erigeron canadensis HOM05D004633 ORTHO05D005503 5.3e-31 138.7 142 51.4
Mapoly0125s0018 Marchantia polymorpha HOM05D004633 ORTHO05D005503 6.9e-31 138.3 146 51.4
Sc03g0001790 Simmondsia chinensis HOM05D004633 ORTHO05D005503 2.0e-30 136.7 74 82.4
Mapoly0048s0005 Marchantia polymorpha HOM05D004633 ORTHO05D005503 5.9e-30 135.2 157 48.4
Pp3c13_19950 Physcomitrium patens HOM05D004633 ORTHO05D005503 5.0e-29 132.1 146 50.0
ECA232G1704 Erigeron canadensis HOM05D004633 ORTHO05D005503 6.5e-29 131.7 73 80.8
DCAR_010864 Daucus carota HOM05D004633 ORTHO05D005503 1.9e-28 130.2 73 79.5
Actinidia03804 Actinidia chinensis HOM05D004633 ORTHO05D005503 1.2e-22 110.9 151 46.4
MCO16G071 Micromonas commoda HOM05D004633 ORTHO05D005503 8.5e-21 104.8 153 38.6
Cre12.g486900 Chlamydomonas reinhardtii HOM05D004633 ORTHO05D005503 2.5e-20 103.2 75 61.3
SEGI_00124 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 4.2e-20 102.4 118 48.3
Pp3c8_25410 Physcomitrium patens HOM05D004633 ORTHO05D005503 1.2e-19 100.9 186 37.6
Nn5g30384 Nelumbo nucifera HOM05D004633 ORTHO05D005503 4.7e-19 99.0 209 38.8
CDE02G1921 Ceratophyllum demersum HOM05D004633 ORTHO05D005503 6.1e-19 98.6 149 38.9
Cfa023304 Carpinus fangiana HOM05D004633 ORTHO05D005503 7.5e-17 91.7 86 51.2
Haze_26560 Corylus avellana HOM05D004633 ORTHO05D005503 2.4e-15 86.7 73 52.1
QL10p045366 Quercus lobata HOM05D004633 ORTHO05D005503 5.2e-10 68.9 37 78.4
CDE02G4202 Ceratophyllum demersum HOM05D004633 ORTHO05D005503 2.0e-09 67.0 37 83.8
CAN.G82.15 Capsicum annuum HOM05D004633 ORTHO05D005503 9.8e-09 64.7 37 78.4
CBR_g36684 Chara braunii HOM05D004633 ORTHO05D005503 1.4e-07 60.8 37 70.3


User provided reference genes

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