Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1158500 Malus domestica HOM05D007578 ORTHO05D009497 2.7e-56 222.2 158 100.0
MD15G1273300 Malus domestica HOM05D007578 ORTHO05D009497 4.5e-43 178.3 165 83.0
Prupe.7G145300 Prunus persica HOM05D007578 ORTHO05D009497 2.7e-35 152.5 163 79.1
RcHm_v2.0_Chr2g0103251 Rosa chinensis HOM05D007578 ORTHO05D009497 2.0e-22 109.8 173 64.7
FAN23G2171 Fragaria x ananassa HOM05D007578 ORTHO05D009497 2.6e-22 109.4 165 65.5
FAN26G3047 Fragaria x ananassa HOM05D007578 ORTHO05D009497 4.4e-22 108.6 166 66.9
FvH4_1g14510 Fragaria vesca HOM05D007578 ORTHO05D009497 1.3e-21 107.1 166 64.5
FAN19G1163 Fragaria x ananassa HOM05D007578 ORTHO05D009497 5.4e-20 101.7 173 64.2
Nitab4.5_0007463g0020 Nicotiana tabacum HOM05D007578 ORTHO05D009497 1.0e-18 97.4 135 68.1
PGSC0003DMG400037576 Solanum tuberosum HOM05D007578 ORTHO05D009497 1.7e-18 96.7 132 69.7
Peaxi162Scf00535g00071 Petunia axillaris HOM05D007578 ORTHO05D009497 2.3e-18 96.3 132 63.6
Lj4P136T24 Lonicera japonica HOM05D007578 ORTHO05D009497 3.0e-18 95.9 126 70.6
Nitab4.5_0000108g0140 Nicotiana tabacum HOM05D007578 ORTHO05D009497 3.0e-18 95.9 135 66.7
QL06p044247 Quercus lobata HOM05D007578 ORTHO05D009497 3.0e-18 95.9 140 63.6
Hma1.2p1_0261F.1_g104930 Hydrangea macrophylla HOM05D007578 ORTHO05D009497 6.6e-18 94.7 156 59.0
Cc07_g05400 Coffea canephora HOM05D007578 ORTHO05D009497 1.9e-17 93.2 160 58.8
Solyc02g090100.1 Solanum lycopersicum HOM05D007578 ORTHO05D009497 4.3e-17 92.0 139 66.2
Sopen02g034790 Solanum pennellii HOM05D007578 ORTHO05D009497 4.3e-17 92.0 139 66.2
CSS0031523 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 7.3e-17 91.3 145 66.2
CSS0032257 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 7.3e-17 91.3 145 66.2
Aa31LG7G13200 Aethionema arabicum HOM05D007578 ORTHO05D009497 1.6e-16 90.1 150 60.0
Actinidia36527 Actinidia chinensis HOM05D007578 ORTHO05D009497 2.1e-16 89.7 152 62.5
CAN.G836.20 Capsicum annuum HOM05D007578 ORTHO05D009497 4.7e-16 88.6 123 69.1
CARHR114700 Cardamine hirsuta HOM05D007578 ORTHO05D009497 6.2e-16 88.2 146 65.1
Manes.13G132100 Manihot esculenta HOM05D007578 ORTHO05D009497 8.1e-16 87.8 152 63.2
arahy.Tifrunner.gnm1.ann1.UX6CPD Arachis hypogaea HOM05D007578 ORTHO05D009497 1.4e-15 87.0 152 63.2
Carub.0004s0288 Capsella rubella HOM05D007578 ORTHO05D009497 2.3e-15 86.3 134 64.9
Phvul.002G023600 Phaseolus vulgaris HOM05D007578 ORTHO05D009497 3.1e-15 85.9 144 63.9
arahy.Tifrunner.gnm1.ann1.25C3YR Arachis hypogaea HOM05D007578 ORTHO05D009497 4.0e-15 85.5 152 62.5
A04p18050 Brassica napus HOM05D007578 ORTHO05D009497 4.0e-15 85.5 151 62.9
FAN28G2485 Fragaria x ananassa HOM05D007578 ORTHO05D009497 4.0e-15 85.5 97 79.4
AL4G13660 Arabidopsis lyrata HOM05D007578 ORTHO05D009497 5.2e-15 85.1 146 62.3
BraA04t17423Z Brassica rapa HOM05D007578 ORTHO05D009497 5.2e-15 85.1 151 62.3
TAR376G0355 Trochodendron aralioides HOM05D007578 ORTHO05D009497 5.2e-15 85.1 142 66.9
DCAR_010946 Daucus carota HOM05D007578 ORTHO05D009497 8.9e-15 84.3 159 57.9
Gohir.A11G045100 Gossypium hirsutum HOM05D007578 ORTHO05D009497 8.9e-15 84.3 157 59.2
Sabra07G0029900 Salix brachista HOM05D007578 ORTHO05D009497 8.9e-15 84.3 156 59.6
Gohir.D11G048600 Gossypium hirsutum HOM05D007578 ORTHO05D009497 1.2e-14 84.0 157 59.2
Potri.007G034300 Populus trichocarpa HOM05D007578 ORTHO05D009497 1.5e-14 83.6 156 59.6
Thecc.01G045800 Theobroma cacao HOM05D007578 ORTHO05D009497 1.5e-14 83.6 142 62.0
C04p52990 Brassica napus HOM05D007578 ORTHO05D009497 2.0e-14 83.2 151 62.3
BolC4t26860H Brassica oleracea HOM05D007578 ORTHO05D009497 2.0e-14 83.2 151 62.3
Sed0003773 Sechium edule HOM05D007578 ORTHO05D009497 2.6e-14 82.8 125 70.4
SGA_v2.0_scaffold15G07205 Striga asiatica HOM05D007578 ORTHO05D009497 2.6e-14 82.8 146 66.4
Duzib264G1198 Durio zibethinus HOM05D007578 ORTHO05D009497 3.4e-14 82.4 148 59.5
Sp4g02640 Schrenkiella parvula HOM05D007578 ORTHO05D009497 3.4e-14 82.4 152 61.8
BcaB06g27923 Brassica carinata HOM05D007578 ORTHO05D009497 5.8e-14 81.6 150 60.0
ClCG02G013060 Citrullus lanatus HOM05D007578 ORTHO05D009497 5.8e-14 81.6 136 66.2
AT2G23670 Arabidopsis thaliana HOM05D007578 ORTHO05D009497 7.5e-14 81.3 145 62.1
Haze_15166 Corylus avellana HOM05D007578 ORTHO05D009497 7.5e-14 81.3 157 59.2
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 9.8e-14 80.9 160 60.0
THA.LOC104804219 Tarenaya hassleriana HOM05D007578 ORTHO05D009497 9.8e-14 80.9 157 58.6
CANSAT01G2356 Cannabis sativa HOM05D007578 ORTHO05D009497 1.3e-13 80.5 129 65.1
TAR628G0552 Trochodendron aralioides HOM05D007578 ORTHO05D009497 1.3e-13 80.5 153 60.8
COL.COLO4_22180 Corchorus olitorius HOM05D007578 ORTHO05D009497 1.7e-13 80.1 157 58.6
Glyma.11G060900 Glycine max HOM05D007578 ORTHO05D009497 1.7e-13 80.1 124 64.5
CiPaw.01G029100 Carya illinoinensis HOM05D007578 ORTHO05D009497 2.2e-13 79.7 151 58.3
Gohir.A02G161500 Gossypium hirsutum HOM05D007578 ORTHO05D009497 2.2e-13 79.7 135 57.0
Gorai.007G052200 Gossypium raimondii HOM05D007578 ORTHO05D009497 4.9e-13 78.6 157 57.3
Psat0s4627g0160 Pisum sativum HOM05D007578 ORTHO05D009497 4.9e-13 78.6 129 64.3
PGR102G1240 Punica granatum HOM05D007578 ORTHO05D009497 4.9e-13 78.6 157 58.0
Gorai.003G019400 Gossypium raimondii HOM05D007578 ORTHO05D009497 6.4e-13 78.2 135 57.8
TPR.G29848 Trifolium pratense HOM05D007578 ORTHO05D009497 1.1e-12 77.4 121 63.6
MSTRG.23805 Avicennia marina HOM05D007578 ORTHO05D009497 1.4e-12 77.0 166 54.2
Duzib147G1180 Durio zibethinus HOM05D007578 ORTHO05D009497 1.4e-12 77.0 169 57.4
Cpa.g.sc15.63 Carica papaya HOM05D007578 ORTHO05D009497 1.9e-12 76.6 149 56.4
MELO3C020917.2 Cucumis melo HOM05D007578 ORTHO05D009497 1.9e-12 76.6 164 59.8
Migut.H00501 Erythranthe guttata HOM05D007578 ORTHO05D009497 1.9e-12 76.6 115 60.0
Ca_24809_v3 Cicer arietinum L. HOM05D007578 ORTHO05D009497 2.4e-12 76.3 119 58.0
Glyma.01G182600 Glycine max HOM05D007578 ORTHO05D009497 3.2e-12 75.9 147 59.2
Ciclev10026636m.g Citrus clementina HOM05D007578 ORTHO05D009497 4.1e-12 75.5 134 53.0
EL10Ac6g14844 Beta vulgaris HOM05D007578 ORTHO05D009497 5.4e-12 75.1 161 50.9
CsaV3_2G017140 Cucumis sativus L. HOM05D007578 ORTHO05D009497 5.4e-12 75.1 164 58.5
Dinv26776 Davidia involucrata HOM05D007578 ORTHO05D009497 7.1e-12 74.7 132 62.1
Oeu032922.1 Olea europaea HOM05D007578 ORTHO05D009497 9.2e-12 74.3 147 59.9
Gohir.D03G019000 Gossypium hirsutum HOM05D007578 ORTHO05D009497 2.1e-11 73.2 131 58.0
Thhalv10000353m.g Eutrema salsugineum HOM05D007578 ORTHO05D009497 2.7e-11 72.8 152 57.9
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 4.6e-11 72.0 127 61.4
Lalb_Chr16g0378091 Lupinus albus HOM05D007578 ORTHO05D009497 4.6e-11 72.0 167 52.1
Lalb_Chr16g0378311 Lupinus albus HOM05D007578 ORTHO05D009497 4.6e-11 72.0 167 52.1
Lsat_1_v5_gn_3_94000 Lactuca sativa HOM05D007578 ORTHO05D009497 1.0e-10 70.9 166 54.8
Peaxi162Scf00150g00132 Petunia axillaris HOM05D007578 ORTHO05D009497 1.3e-10 70.5 96 69.8
Atru.chr3.471 Acer truncatum HOM05D007578 ORTHO05D009497 1.7e-10 70.1 141 58.2
CDE11G1131 Ceratophyllum demersum HOM05D007578 ORTHO05D009497 3.0e-10 69.3 122 54.1
Sc03g0001220 Simmondsia chinensis HOM05D007578 ORTHO05D009497 3.0e-10 69.3 157 47.1
SalBow1G1613 Salvia bowleyana HOM05D007578 ORTHO05D009497 3.9e-10 68.9 117 60.7
Dinv39922 Davidia involucrata HOM05D007578 ORTHO05D009497 6.6e-10 68.2 214 46.3
Medtr5g018590 Medicago truncatula HOM05D007578 ORTHO05D009497 1.5e-09 67.0 118 56.8
MBI07_g23234_MAGBIO Magnolia biondii HOM05D007578 ORTHO05D009497 5.6e-09 65.1 145 55.9
TWI53G0440 Tripterygium wilfordii HOM05D007578 ORTHO05D009497 5.6e-09 65.1 149 59.1
Aqoxy2G01906 Aquilegia oxysepala HOM05D007578 ORTHO05D009497 9.5e-09 64.3 120 65.0
HanXRQChr12g0378461 Helianthus annuus HOM05D007578 ORTHO05D009497 9.5e-09 64.3 159 39.6
Ah.03g142130 Amaranthus hybridus HOM05D007578 ORTHO05D009497 1.6e-08 63.5 166 51.2
ECA246G0471 Erigeron canadensis HOM05D007578 ORTHO05D009497 1.6e-08 63.5 94 68.1
PSO017G5052 Papaver somniferum HOM05D007578 ORTHO05D009497 1.4e-07 60.5 153 54.9
PSO170G5738 Papaver somniferum HOM05D007578 ORTHO05D009497 1.4e-07 60.5 153 54.9
CAN.G1525.2 Capsicum annuum HOM05D007578 ORTHO05D009497 5.2e-07 58.5 131 53.4
HPP92_014833 Vanilla planifolia HOM05D007578 ORTHO05D009497 5.2e-07 58.5 120 47.5
unitig_21.g20937 Utricularia gibba HOM05D000261 ORTHO05D001168 8.9e-07 57.8 134 53.0


User provided reference genes

Program Settings