Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.7e-221 772.7 483 100.0
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.3e-193 678.7 483 85.1
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 5.2e-175 618.2 485 78.8
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 9.6e-153 544.3 494 69.8
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 1.6e-152 543.5 494 67.2
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 3.1e-151 539.3 494 66.0
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 4.0e-151 538.9 494 66.8
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.6e-150 536.2 494 65.8
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 7.1e-140 501.5 433 67.4
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 6.7e-138 495.0 466 63.9
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 7.4e-137 491.5 492 65.7
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 7.4e-137 491.5 466 62.9
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 9.7e-137 491.1 465 65.4
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.6e-136 490.3 470 63.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-133 480.7 501 61.7
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 4.2e-132 475.7 465 66.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.2e-132 474.9 501 60.7
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.2e-132 474.9 465 61.3
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.4e-132 474.6 501 61.1
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.2e-131 474.2 464 62.9
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 3.6e-131 472.6 481 59.5
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 3.6e-131 472.6 496 64.1
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 6.1e-131 471.9 444 64.4
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.3e-129 466.1 466 62.7
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 7.4e-129 464.9 471 63.7
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.2e-128 463.4 483 63.4
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.3e-127 458.8 470 62.1
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 6.9e-127 458.4 463 62.6
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 4.5e-126 455.7 461 63.6
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.6e-123 447.2 469 60.8
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.1e-123 446.8 468 60.7
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 3.0e-122 443.0 423 66.9
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 3.0e-122 443.0 470 60.6
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.6e-121 439.9 470 58.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.7e-121 438.7 465 63.2
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 9.7e-121 438.0 465 63.2
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 4.8e-120 435.6 471 60.5
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.4e-119 434.1 469 57.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.8e-119 433.7 468 57.5
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-119 433.3 465 62.8
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.6e-118 429.9 491 58.7
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.0e-117 427.9 470 61.9
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.3e-117 427.6 473 59.2
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.2e-117 426.8 570 51.8
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.8e-117 426.0 465 57.8
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 8.5e-117 424.9 481 56.5
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.4e-116 424.1 464 57.8
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.9e-116 423.7 466 58.4
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 2.5e-116 423.3 466 58.8
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 3.2e-116 422.9 465 61.1
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 3.2e-116 422.9 465 60.4
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 4.2e-116 422.5 441 62.1
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.2e-115 421.0 454 62.3
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.6e-115 420.6 462 58.0
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 1.6e-115 420.6 469 61.2
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 3.6e-115 419.5 460 56.3
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 4.7e-115 419.1 440 59.3
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 6.1e-115 418.7 435 56.8
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 6.1e-115 418.7 464 57.5
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.1e-115 418.7 454 62.1
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 8.0e-115 418.3 460 59.1
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.8e-114 417.2 469 59.3
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 2.3e-114 416.8 509 56.6
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.3e-114 416.8 465 60.6
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.6e-113 413.3 481 59.0
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.7e-112 410.6 476 57.8
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 8.2e-112 408.3 472 59.5
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.4e-111 406.8 483 56.3
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.4e-111 406.8 461 57.7
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 4.1e-111 406.0 495 58.2
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 9.1e-111 404.8 469 55.4
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 5.9e-110 402.1 449 60.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.0e-109 401.4 495 54.9
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.0e-109 401.4 482 58.1
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.9e-109 399.8 484 58.3
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.1e-108 397.9 475 56.8
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.5e-108 397.5 489 56.9
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 9.4e-108 394.8 461 57.5
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.1e-107 393.7 468 54.5
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.8e-106 390.6 407 62.7
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 9.7e-105 384.8 481 57.4
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 3.7e-104 382.9 479 55.7
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.1e-103 381.3 462 56.9
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.4e-103 380.9 466 56.7
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.8e-103 380.6 462 53.5
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.7e-102 376.7 470 55.5
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 5.9e-102 375.6 497 54.7
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 6.5e-101 372.1 433 60.0
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.9e-100 370.5 453 55.0
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 4.2e-100 369.4 453 57.6
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.6e-99 367.5 454 53.7
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 8.0e-99 365.2 463 51.4
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.3e-98 363.6 477 50.9
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.2e-97 361.3 465 55.7
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 7.5e-97 358.6 454 55.9
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 7.0e-95 352.1 461 52.1
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.6e-94 350.9 365 61.4
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 2.7e-94 350.1 475 49.7
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.5e-94 349.7 396 54.0
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 3.3e-92 343.2 465 51.2
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.2e-91 341.3 460 54.8
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.2e-91 341.3 343 66.2
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.1e-91 340.5 449 54.8
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.8e-91 340.1 473 53.3
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 4.7e-91 339.3 438 55.5
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.0e-91 338.6 455 52.5
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 1.4e-90 337.8 457 55.1
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 7.5e-89 332.0 449 53.0
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 8.3e-88 328.6 571 43.6
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.7e-85 320.9 528 44.3
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 6.6e-85 318.9 458 51.7
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-84 318.2 468 47.9
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.5e-84 317.0 454 54.2
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.0e-82 311.6 460 52.2
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 3.1e-82 310.1 255 72.9
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 7.5e-81 305.4 505 52.1
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 9.2e-79 298.5 267 65.2
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 7.8e-78 295.4 365 56.7
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 6.2e-75 285.8 266 64.7
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 8.9e-74 282.0 451 44.1
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.7e-72 277.7 474 45.1
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.8e-66 257.7 492 44.5
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 9.9e-65 251.9 461 43.6
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.2e-62 245.0 288 56.9
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.6e-62 244.6 423 44.4
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 2.4e-58 230.7 398 45.2
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.2e-57 228.4 270 63.7
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 4.3e-44 183.3 438 32.6
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.6e-41 174.1 464 33.2
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 5.6e-36 156.4 271 43.2
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 5.8e-33 146.4 395 37.0
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.2e-32 144.4 169 53.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 7.4e-28 129.4 461 31.5
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.4e-26 125.2 111 58.6
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.8e-24 117.1 67 80.6
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.0e-21 109.0 79 68.4
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.8e-21 108.2 86 57.0
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 1.9e-20 104.8 198 42.4
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 3.7e-19 100.5 305 32.5
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-18 98.6 68 80.9
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.5e-17 95.1 187 39.6
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 2.6e-17 94.4 399 32.1
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.5e-17 93.6 133 43.6
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.9e-17 93.2 87 58.6
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 6.5e-16 89.7 180 38.3
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 2.7e-14 84.3 74 63.5
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 4.6e-14 83.6 156 45.5
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.9e-13 80.5 193 37.3
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 2.0e-12 78.2 112 44.6
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 5.7e-12 76.6 263 27.8
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 8.2e-11 72.8 206 35.9
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.1e-10 72.4 151 47.7
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 1.1e-10 72.4 107 42.1
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.1e-10 72.4 193 35.2
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 4.1e-10 70.5 304 27.6
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.6e-09 67.8 70 48.6
Cre06.g280800 Chlamydomonas reinhardtii HOM05D004401 ORTHO05D005169 1.0e-08 65.9 276 31.5
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 3.8e-08 63.9 315 26.7


User provided reference genes

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