Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1151800 Malus domestica HOM05D001304 ORTHO05D007800 4.6e-149 531.2 265 100.0
MD13G1110200 Malus domestica HOM05D001304 ORTHO05D007800 1.7e-79 300.1 271 63.1
Prupe.1G234500 Prunus persica HOM05D001304 ORTHO05D007800 9.5e-78 294.3 250 65.2
MD16G1110200 Malus domestica HOM05D001304 ORTHO05D007800 6.0e-72 275.0 231 65.4
RcHm_v2.0_Chr4g0431491 Rosa chinensis HOM05D001304 ORTHO05D007800 3.9e-71 272.3 250 60.4
FAN17G0228 Fragaria x ananassa HOM05D001304 ORTHO05D007800 1.6e-69 266.9 250 59.2
FAN12G0304 Fragaria x ananassa HOM05D001304 ORTHO05D007800 6.2e-69 265.0 250 59.6
FAN07G2070 Fragaria x ananassa HOM05D001304 ORTHO05D007800 1.4e-68 263.8 250 58.8
FvH4_4g24570 Fragaria vesca HOM05D001304 ORTHO05D007800 6.8e-68 261.5 252 59.1
CiPaw.06G063200 Carya illinoinensis HOM05D001304 ORTHO05D007800 8.9e-68 261.2 274 54.0
Atru.BG.281.p Acer truncatum HOM05D001304 ORTHO05D007800 2.4e-65 253.1 253 54.2
Atru.chr11.2222 Acer truncatum HOM05D001304 ORTHO05D007800 2.4e-65 253.1 253 54.2
CANSAT21G0986 Cannabis sativa HOM05D001304 ORTHO05D007800 3.5e-64 249.2 250 54.4
QL03p055365 Quercus lobata HOM05D001304 ORTHO05D007800 5.1e-63 245.4 253 53.8
Gorai.005G172700 Gossypium raimondii HOM05D001304 ORTHO05D007800 1.9e-62 243.4 250 54.0
Haze_12334 Corylus avellana HOM05D001304 ORTHO05D007800 9.5e-62 241.1 272 51.5
Glyma.18G010200 Glycine max HOM05D001304 ORTHO05D007800 1.2e-61 240.7 248 51.6
Lj6C820G6 Lonicera japonica HOM05D001304 ORTHO05D007800 1.6e-61 240.4 250 54.8
Gohir.D02G153600 Gossypium hirsutum HOM05D001304 ORTHO05D007800 2.8e-61 239.6 250 53.2
Ciclev10033657m.g Citrus clementina HOM05D001304 ORTHO05D007800 3.6e-61 239.2 253 52.6
Gohir.A03G129900 Gossypium hirsutum HOM05D001304 ORTHO05D007800 3.6e-61 239.2 268 51.5
Cfa009301 Carpinus fangiana HOM05D001304 ORTHO05D007800 1.1e-60 237.7 272 50.7
Potri.010G054466 Populus trichocarpa HOM05D001304 ORTHO05D007800 1.8e-60 236.9 253 50.6
Thecc.02G272500 Theobroma cacao HOM05D001304 ORTHO05D007800 3.1e-60 236.1 269 51.3
Dinv11004 Davidia involucrata HOM05D001304 ORTHO05D007800 5.2e-60 235.3 250 52.8
Ca_16492_v3 Cicer arietinum L. HOM05D001304 ORTHO05D007800 6.8e-60 235.0 250 51.6
Manes.12G016550 Manihot esculenta HOM05D001304 ORTHO05D007800 1.5e-59 233.8 250 50.4
Sabra10G0050400 Salix brachista HOM05D001304 ORTHO05D007800 1.5e-59 233.8 272 49.6
TAR629G3532 Trochodendron aralioides HOM05D001304 ORTHO05D007800 2.0e-59 233.4 244 52.0
CsaV3_2G025240 Cucumis sativus L. HOM05D001304 ORTHO05D007800 3.4e-59 232.6 281 48.8
MELO3C010721.2 Cucumis melo HOM05D001304 ORTHO05D007800 7.6e-59 231.5 258 50.4
TWI75G0249 Tripterygium wilfordii HOM05D001304 ORTHO05D007800 7.6e-59 231.5 269 50.2
arahy.Tifrunner.gnm1.ann1.J2BJ93 Arachis hypogaea HOM05D001304 ORTHO05D007800 1.7e-58 230.3 250 51.2
ClCG08G017380 Citrullus lanatus HOM05D001304 ORTHO05D007800 2.9e-58 229.6 281 48.8
TPR.G33396 Trifolium pratense HOM05D001304 ORTHO05D007800 3.8e-58 229.2 250 50.8
arahy.Tifrunner.gnm1.ann1.D3J7CW Arachis hypogaea HOM05D001304 ORTHO05D007800 4.9e-58 228.8 248 51.2
MBI11_g16648_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D007800 6.4e-58 228.4 244 51.6
Nn4g22445 Nelumbo nucifera HOM05D001304 ORTHO05D007800 6.4e-58 228.4 244 52.0
Lj6g0014976 Lotus japonicus HOM05D001304 ORTHO05D007800 1.4e-57 227.3 248 51.6
Rhsim12G0036000 Rhododendron simsii HOM05D001304 ORTHO05D007800 1.4e-57 227.3 250 52.0
Medtr3g086000 Medicago truncatula HOM05D001304 ORTHO05D007800 2.4e-57 226.5 250 50.0
Psat5g093160 Pisum sativum HOM05D001304 ORTHO05D007800 2.4e-57 226.5 250 50.4
COL.COLO4_23601 Corchorus olitorius HOM05D001304 ORTHO05D007800 5.4e-57 225.3 284 48.6
Phvul.001G258500 Phaseolus vulgaris HOM05D001304 ORTHO05D007800 5.4e-57 225.3 249 48.6
Lalb_Chr11g0075661 Lupinus albus HOM05D001304 ORTHO05D007800 7.1e-57 224.9 248 50.4
Peaxi162Scf00160g00921 Petunia axillaris HOM05D001304 ORTHO05D007800 9.2e-57 224.6 246 50.4
Glyma.11G247133 Glycine max HOM05D001304 ORTHO05D007800 1.2e-56 224.2 256 48.8
SGA_v2.0_scaffold64G21891 Striga asiatica HOM05D001304 ORTHO05D007800 1.6e-56 223.8 250 50.0
CSS0031471 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D007800 2.1e-56 223.4 250 51.2
ECA233G6138 Erigeron canadensis HOM05D001304 ORTHO05D007800 4.6e-56 222.2 250 50.4
GSVIVG01010319001 Vitis vinifera HOM05D001304 ORTHO05D007800 4.6e-56 222.2 250 48.8
Oeu041694.1 Olea europaea HOM05D001304 ORTHO05D007800 6.0e-56 221.9 284 46.5
Sed0013965 Sechium edule HOM05D001304 ORTHO05D007800 6.0e-56 221.9 258 49.6
Eucgr.B03454 Eucalyptus grandis HOM05D001304 ORTHO05D007800 1.3e-55 220.7 247 50.6
VMungo1383G2972 Vigna mungo HOM05D001304 ORTHO05D007800 1.3e-55 220.7 249 48.6
Migut.K00684 Erythranthe guttata HOM05D001304 ORTHO05D007800 1.7e-55 220.3 250 47.6
Actinidia30684 Actinidia chinensis HOM05D001304 ORTHO05D007800 2.3e-55 219.9 250 51.2
MSTRG.532 Avicennia marina HOM05D001304 ORTHO05D007800 2.3e-55 219.9 250 49.2
Sopen09g007800 Solanum pennellii HOM05D001304 ORTHO05D007800 2.3e-55 219.9 246 49.2
SalBow2G1645 Salvia bowleyana HOM05D001304 ORTHO05D007800 3.0e-55 219.5 250 49.6
Cpa.g.sc86.3 Carica papaya HOM05D001304 ORTHO05D007800 3.9e-55 219.2 289 48.1
HanXRQChr12g0372151 Helianthus annuus HOM05D001304 ORTHO05D007800 3.9e-55 219.2 250 49.6
Solyc09g014890.3 Solanum lycopersicum HOM05D001304 ORTHO05D007800 5.1e-55 218.8 246 49.2
PGR102G3374 Punica granatum HOM05D001304 ORTHO05D007800 6.6e-55 218.4 244 50.0
DCAR_026485 Daucus carota HOM05D001304 ORTHO05D007800 8.7e-55 218.0 262 46.2
Aqoxy5G03558 Aquilegia oxysepala HOM05D001304 ORTHO05D007800 1.5e-54 217.2 250 49.2
AUR62024175 Chenopodium quinoa HOM05D001304 ORTHO05D007800 7.3e-54 214.9 253 47.0
Cc11_g16440 Coffea canephora HOM05D001304 ORTHO05D007800 7.3e-54 214.9 269 48.0
Lsat_1_v5_gn_8_151441 Lactuca sativa HOM05D001304 ORTHO05D007800 4.8e-53 212.2 259 47.5
FAN22G1988 Fragaria x ananassa HOM05D001304 ORTHO05D007800 8.1e-53 211.5 250 50.4
Sc11g0000750 Simmondsia chinensis HOM05D001304 ORTHO05D007800 1.1e-52 211.1 247 48.2
Ah.03g133760 Amaranthus hybridus HOM05D001304 ORTHO05D007800 4.0e-52 209.1 253 45.8
AUR62005559 Chenopodium quinoa HOM05D001304 ORTHO05D007800 5.3e-52 208.8 253 45.8
PSO782G2509 Papaver somniferum HOM05D001304 ORTHO05D007800 6.9e-52 208.4 244 46.7
PSO063G3228 Papaver somniferum HOM05D001304 ORTHO05D007800 9.0e-52 208.0 252 45.2
C06p38530 Brassica napus HOM05D001304 ORTHO05D007800 4.4e-51 205.7 247 46.6
ATR0824G247 Amborella trichopoda HOM05D001304 ORTHO05D007800 9.9e-51 204.5 244 45.1
THA.LOC104825527 Tarenaya hassleriana HOM05D001304 ORTHO05D007800 9.9e-51 204.5 247 46.2
Thhalv10018203m.g Eutrema salsugineum HOM05D001304 ORTHO05D007800 1.3e-50 204.1 247 46.2
BolC6t38946H Brassica oleracea HOM05D001304 ORTHO05D007800 1.7e-50 203.8 243 46.5
BraA07t30870Z Brassica rapa HOM05D001304 ORTHO05D007800 2.2e-50 203.4 247 45.7
vmacro01093 Vaccinium macrocarpon HOM05D001304 ORTHO05D007800 2.2e-50 203.4 311 41.5
A07p34200 Brassica napus HOM05D001304 ORTHO05D007800 2.9e-50 203.0 247 46.2
BraA07t31049Z Brassica rapa HOM05D001304 ORTHO05D007800 2.9e-50 203.0 247 46.2
A07p32460 Brassica napus HOM05D001304 ORTHO05D007800 3.8e-50 202.6 247 46.2
BcaB03g15176 Brassica carinata HOM05D001304 ORTHO05D007800 4.9e-50 202.2 247 46.6
BcaC08g46186 Brassica carinata HOM05D001304 ORTHO05D007800 4.9e-50 202.2 247 45.3
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 4.9e-50 202.2 247 45.3
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 4.9e-50 202.2 247 45.3
unitig_747.g21137 Utricularia gibba HOM05D001304 ORTHO05D007800 6.4e-50 201.8 246 45.5
CARHR060280 Cardamine hirsuta HOM05D001304 ORTHO05D007800 1.1e-49 201.1 247 46.2
Sp5g22680 Schrenkiella parvula HOM05D001304 ORTHO05D007800 5.4e-49 198.7 247 44.5
Carub.0002s1412 Capsella rubella HOM05D001304 ORTHO05D007800 7.1e-49 198.4 247 44.9
Hund25432 Selenicereus undatus HOM05D001304 ORTHO05D007800 7.1e-49 198.4 276 43.1
AT1G67690 Arabidopsis thaliana HOM05D001304 ORTHO05D007800 2.1e-48 196.8 247 43.7
Aa31LG11G12080 Aethionema arabicum HOM05D001304 ORTHO05D007800 4.6e-48 195.7 247 45.7
AL2G26390 Arabidopsis lyrata HOM05D001304 ORTHO05D007800 4.6e-48 195.7 247 44.5
BcaB03g15369 Brassica carinata HOM05D001304 ORTHO05D007800 3.9e-47 192.6 247 45.3
Os01g0902200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D007800 1.8e-44 183.7 243 42.0
Zm00001eb144370 Zea mays HOM05D001304 ORTHO05D007800 2.4e-44 183.3 246 42.3
EL10Ac6g13421 Beta vulgaris HOM05D001304 ORTHO05D007800 4.5e-43 179.1 318 35.8
Nitab4.5_0002483g0020 Nicotiana tabacum HOM05D001304 ORTHO05D007800 2.4e-36 156.8 162 49.4
Mapoly0080s0066 Marchantia polymorpha HOM05D001304 ORTHO05D007800 1.3e-34 151.0 244 35.2
Pp3c19_17580 Physcomitrium patens HOM05D001304 ORTHO05D007800 1.7e-34 150.6 244 34.8
Nitab4.5_0000139g0070 Nicotiana tabacum HOM05D001304 ORTHO05D007800 1.9e-33 147.1 155 49.0
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.2e-32 144.4 257 33.1
CAN.G1220.1 Capsicum annuum HOM05D001304 ORTHO05D007800 2.3e-31 140.2 148 52.7
Pp3c18_20030 Physcomitrium patens HOM05D001304 ORTHO05D007800 2.4e-28 130.2 198 34.3
SMO364G0683 Selaginella moellendorffii HOM05D001304 ORTHO05D007800 9.3e-25 118.2 245 33.1
CAN.G1928.2 Capsicum annuum HOM05D001304 ORTHO05D007800 4.5e-19 99.4 72 59.7
SEGI_38583 Sequoiadendron giganteum HOM05D001304 ORTHO05D007800 8.2e-13 78.6 76 44.7
CSS0009053 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D007800 1.4e-12 77.8 100 48.0
CDE09G0141 Ceratophyllum demersum HOM05D001304 ORTHO05D007800 2.7e-08 63.5 60 50.0
RcHm_v2.0_Chr4g0431531 Rosa chinensis HOM05D001304 ORTHO05D345318 2.7e-08 63.5 42 73.8
CSS0003445 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D007800 3.6e-08 63.2 117 40.2
Lj8C39T8 Lonicera japonica HOM05D005948 ORTHO05D007689 6.1e-08 62.4 155 25.8
MCO13G480 Micromonas commoda HOM05D005948 ORTHO05D007689 7.9e-08 62.0 235 25.1
CARHR264310 Cardamine hirsuta HOM05D005948 ORTHO05D007689 1.4e-07 61.2 138 29.0
Prupe.2G280500 Prunus persica HOM05D005948 ORTHO05D007689 1.8e-07 60.8 263 22.8
Solyc03g083580.3 Solanum lycopersicum HOM05D005948 ORTHO05D007689 2.3e-07 60.5 161 25.5
TAR375G0868 Trochodendron aralioides HOM05D005948 ORTHO05D007689 2.3e-07 60.5 158 27.2
Sopen03g023390 Solanum pennellii HOM05D005948 ORTHO05D007689 3.0e-07 60.1 161 25.5
Lsat_1_v5_gn_8_9260 Lactuca sativa HOM05D005948 ORTHO05D007689 6.7e-07 58.9 138 23.9
Nn4g26350 Nelumbo nucifera HOM05D005948 ORTHO05D007689 8.8e-07 58.5 260 21.9
BraA03t10903Z Brassica rapa HOM05D005948 ORTHO05D007689 1.5e-06 57.8 138 28.3
PGR142G1204 Punica granatum HOM05D005948 ORTHO05D007689 1.5e-06 57.8 185 25.4
QL09p019069 Quercus lobata HOM05D005948 ORTHO05D007689 1.5e-06 57.8 138 26.8
Aa31LG3G7950 Aethionema arabicum HOM05D005948 ORTHO05D007689 2.0e-06 57.4 138 27.5
Sed0017785 Sechium edule HOM05D005948 ORTHO05D007689 2.0e-06 57.4 155 25.2
CAN.G152.16 Capsicum annuum HOM05D005948 ORTHO05D007689 2.6e-06 57.0 161 25.5
Rhsim03G0169500 Rhododendron simsii HOM05D005948 ORTHO05D007689 2.6e-06 57.0 155 23.2
SMO172G0186 Selaginella moellendorffii HOM05D005948 ORTHO05D007689 2.6e-06 57.0 132 30.3
BcaC01g06127 Brassica carinata HOM05D005948 ORTHO05D007689 3.3e-06 56.6 138 27.5
A03p16120 Brassica napus HOM05D005948 ORTHO05D007689 3.3e-06 56.6 138 27.5
C03p18990 Brassica napus HOM05D005948 ORTHO05D007689 3.3e-06 56.6 138 27.5
BolC3t14288H Brassica oleracea HOM05D005948 ORTHO05D007689 3.3e-06 56.6 138 27.5
CsaV3_3G016260 Cucumis sativus L. HOM05D005948 ORTHO05D007689 3.3e-06 56.6 155 25.8
GSVIVG01018572001 Vitis vinifera HOM05D005948 ORTHO05D007689 3.3e-06 56.6 155 24.5
FAN10G0255 Fragaria x ananassa HOM05D005948 ORTHO05D007689 4.4e-06 56.2 256 22.3
ECA233G5295 Erigeron canadensis HOM05D005948 ORTHO05D007689 7.4e-06 55.5 138 22.5
FAN03G1032 Fragaria x ananassa HOM05D005948 ORTHO05D007689 7.4e-06 55.5 162 25.3
Carub.0008s1157 Capsella rubella HOM05D005948 ORTHO05D007689 9.7e-06 55.1 138 27.5
Cpa.g.sc3.294 Carica papaya HOM05D005948 ORTHO05D007689 9.7e-06 55.1 174 25.3
Haze_13840 Corylus avellana HOM05D005948 ORTHO05D007689 9.7e-06 55.1 266 23.3
MBI04_g35669_MAGBIO Magnolia biondii HOM05D005948 ORTHO05D007689 9.7e-06 55.1 138 26.1


User provided reference genes

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