Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 1.2e-109 399.8 193 100.0
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 2.7e-106 388.7 193 96.4
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 8.4e-100 367.1 193 89.6
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.1e-99 366.7 193 90.7
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.1e-99 366.7 193 90.2
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 90.7
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 90.7
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 4.2e-99 364.8 193 89.1
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 5.4e-99 364.4 193 91.7
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 5.4e-99 364.4 193 89.6
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 7.1e-99 364.0 193 89.6
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.2e-98 363.2 193 90.2
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 88.6
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 88.1
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 88.6
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 3.5e-98 361.7 193 89.1
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 3.5e-98 361.7 193 89.6
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 6.0e-98 360.9 193 89.1
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 88.1
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 87.6
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 88.6
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 87.6
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 88.1
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 1.0e-97 360.1 192 88.0
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 3.0e-97 358.6 191 88.5
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 3.0e-97 358.6 193 87.0
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 5.1e-97 357.8 193 88.6
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 6.7e-97 357.5 193 87.6
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.1e-96 356.7 193 87.6
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.5e-96 356.3 190 88.4
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 1.5e-96 356.3 190 91.1
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.9e-96 355.9 194 89.2
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 88.6
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 4.3e-96 354.8 193 88.6
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 7.4e-96 354.0 190 88.9
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 7.4e-96 354.0 193 86.5
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 1.3e-95 353.2 190 89.5
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 1.6e-95 352.8 193 86.0
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 1.6e-95 352.8 190 89.5
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 1.6e-95 352.8 190 88.9
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 6.2e-95 350.9 219 78.1
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 1.1e-94 350.1 190 87.9
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.8e-94 349.4 190 88.9
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.8e-94 349.4 190 88.9
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 83.9
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 3.1e-94 348.6 193 83.9
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 3.1e-94 348.6 194 86.1
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 6.9e-94 347.4 190 88.4
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 2.6e-93 345.5 193 86.0
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 2.6e-93 345.5 193 84.5
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 83.9
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 83.4
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 85.0
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 82.9
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 7.6e-93 344.0 190 86.8
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 1.0e-92 343.6 193 83.9
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 1.3e-92 343.2 190 85.3
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 1.3e-92 343.2 190 85.3
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 1.7e-92 342.8 197 84.3
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 2.2e-92 342.4 190 87.4
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 2.2e-92 342.4 193 84.5
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 2.9e-92 342.0 193 82.9
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 2.9e-92 342.0 190 85.8
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 3.8e-92 341.7 193 82.4
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 3.8e-92 341.7 193 82.4
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 3.8e-92 341.7 193 82.4
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 4.9e-92 341.3 193 84.5
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 1.1e-91 340.1 193 83.4
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.1e-91 340.1 193 82.4
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 81.9
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 3.2e-91 338.6 182 89.0
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 9.3e-91 337.0 190 84.7
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.2e-90 336.7 193 82.9
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 1.6e-90 336.3 190 85.3
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 2.7e-90 335.5 232 72.0
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.8e-89 332.8 193 82.9
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 5.1e-89 331.3 193 81.3
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 1.9e-88 329.3 193 81.3
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.5e-88 328.9 210 77.1
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 5.7e-88 327.8 247 70.0
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 7.4e-88 327.4 193 81.9
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 7.4e-88 327.4 200 78.5
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 1.3e-87 326.6 177 85.9
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.1e-87 325.9 193 81.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.1e-87 325.9 193 81.9
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 2.9e-84 315.5 170 88.2
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 4.9e-84 314.7 199 76.4
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 2.5e-83 312.4 164 91.5
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.2e-82 310.1 177 81.4
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 3.5e-82 308.5 193 78.2
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.6e-82 308.1 167 88.6
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 4.6e-82 308.1 172 87.2
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 2.3e-81 305.8 164 85.4
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 2.3e-81 305.8 174 87.4
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 8.7e-81 303.9 190 80.5
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 1.3e-79 300.1 193 74.1
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 7.7e-77 290.8 159 86.8
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 1.6e-74 283.1 157 88.5
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.1e-74 282.7 158 88.0
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 7.4e-72 274.2 197 68.5
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.8e-71 272.3 156 84.6
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.5e-67 259.2 134 92.5
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 4.7e-66 255.0 139 87.1
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 4.7e-66 255.0 194 67.0
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.6e-64 249.2 227 61.2
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 4.5e-61 238.4 133 86.5
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 4.5e-61 238.4 170 65.9
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 5.9e-61 238.0 164 70.1
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 6.1e-58 228.0 170 62.9
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 2.0e-56 223.0 190 63.2
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 2.6e-56 222.6 170 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 3.3e-56 222.2 173 60.1
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 7.4e-56 221.1 166 68.1
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 9.1e-54 214.2 178 56.7
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 5.0e-52 208.4 112 85.7
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 4.0e-49 198.7 166 59.0
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 1.9e-43 179.9 142 57.0
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 2.7e-42 176.0 131 66.4
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 2.4e-38 162.9 144 50.0
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 9.1e-38 161.0 112 63.4
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.6e-32 142.9 167 50.3
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 9.2e-30 134.4 135 54.1
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.9e-27 126.7 135 53.3
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 9.5e-27 124.4 135 55.6
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 2.9e-23 112.8 125 48.0
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.5e-21 105.9 68 73.5
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.0e-21 105.1 219 36.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.6e-20 101.7 123 48.8
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.1e-18 96.7 135 43.7
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 2.3e-17 93.2 53 84.9
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.4e-16 89.4 57 73.7
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 2.2e-15 86.7 50 82.0
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 3.5e-13 79.3 57 64.9
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 4.0e-09 65.9 33 81.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.4e-08 62.8 102 39.2


User provided reference genes

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