Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 8.1e-218 760.0 352 100.0
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 1.4e-124 450.3 367 63.2
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 7.1e-121 438.0 367 60.2
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 1.1e-118 430.6 292 70.2
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 2.2e-106 389.8 286 65.4
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 2.7e-104 382.9 283 62.5
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 7.4e-102 374.8 270 65.6
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 3.1e-100 369.4 271 64.9
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 7.6e-99 364.8 312 58.3
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 7.1e-97 358.2 278 61.5
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 5.1e-95 352.1 274 61.3
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 9.6e-94 347.8 270 63.3
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 3.1e-92 342.8 273 60.4
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 4.5e-91 339.0 369 49.9
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 1.3e-90 337.4 298 56.4
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 3.8e-90 335.9 268 59.3
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 3.2e-89 332.8 298 55.7
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 1.9e-86 323.6 299 54.2
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 2.1e-85 320.1 299 53.2
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 3.7e-85 319.3 297 53.5
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 8.2e-85 318.2 297 53.9
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 1.1e-84 317.8 303 55.1
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 1.1e-84 317.8 372 47.6
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.8e-84 317.0 372 47.3
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.8e-84 317.0 315 52.7
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 1.8e-84 317.0 272 59.9
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 3.4e-83 312.8 301 55.1
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 4.5e-83 312.4 272 56.2
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 8.4e-82 308.1 365 46.6
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 1.1e-81 307.8 304 51.3
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 4.2e-81 305.8 296 54.4
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 5.5e-81 305.4 300 51.7
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 7.2e-81 305.1 299 50.5
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 2.7e-80 303.1 299 52.5
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 7.9e-80 301.6 299 51.2
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 1.0e-79 301.2 299 50.8
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.3e-79 300.8 299 51.8
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 2.3e-79 300.1 297 51.2
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 3.9e-79 299.3 299 51.8
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 6.7e-79 298.5 299 50.5
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 6.7e-79 298.5 298 51.7
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 1.5e-78 297.4 297 50.5
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 2.5e-78 296.6 231 61.5
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 7.4e-78 295.0 311 49.5
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.3e-77 294.3 299 50.5
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 2.2e-77 293.5 299 51.2
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 2.2e-77 293.5 299 51.2
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 2.6e-75 286.6 299 49.2
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 1.0e-74 284.6 302 50.3
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 1.3e-74 284.3 308 48.4
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 2.2e-74 283.5 299 47.8
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 6.5e-74 282.0 299 49.5
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 3.2e-73 279.6 331 45.3
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 3.9e-71 272.7 318 48.1
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 1.5e-70 270.8 216 61.1
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 2.0e-70 270.4 311 47.9
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 6.3e-69 265.4 256 54.3
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 5.3e-68 262.3 309 46.9
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 7.7e-67 258.5 309 46.6
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 1.7e-66 257.3 309 46.3
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 2.9e-66 256.5 306 47.1
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 3.8e-66 256.1 254 54.3
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 5.5e-65 252.3 299 47.5
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 1.6e-64 250.8 334 44.3
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 3.6e-64 249.6 304 45.7
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 3.9e-63 246.1 299 48.5
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 5.1e-63 245.7 243 52.7
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 9.7e-62 241.5 330 42.4
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 3.7e-61 239.6 268 47.0
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 6.3e-61 238.8 319 43.3
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 7.0e-60 235.3 154 68.2
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 1.2e-59 234.6 325 41.5
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 6.5e-58 228.8 311 43.1
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 1.4e-55 221.1 320 40.6
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 5.2e-55 219.2 257 46.7
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 3.3e-54 216.5 298 42.3
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.0e-50 204.9 293 43.3
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 1.3e-50 204.5 311 40.2
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 2.2e-50 203.8 283 44.5
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 3.6e-48 196.4 298 41.6
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 6.1e-48 195.7 256 44.1
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 6.1e-48 195.7 297 40.4
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 5.2e-47 192.6 300 40.3
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 6.8e-47 192.2 298 40.6
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 1.2e-46 191.4 305 40.3
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 3.4e-46 189.9 346 36.4
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 7.5e-46 188.7 306 40.2
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 2.2e-45 187.2 307 38.8
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 4.8e-45 186.0 352 35.5
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 2.0e-43 180.6 261 39.8
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 4.5e-43 179.5 298 38.6
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 5.9e-43 179.1 264 41.3
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 1.1e-41 174.9 257 41.2
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 1.5e-41 174.5 263 41.1
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 1.9e-41 174.1 257 43.2
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 1.2e-40 171.4 305 36.7
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 2.7e-40 170.2 265 40.8
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 3.6e-40 169.9 264 40.9
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 4.0e-39 166.4 257 41.2
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 2.2e-37 160.6 258 39.9
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 6.6e-34 149.1 394 29.2
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 1.9e-33 147.5 139 52.5
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 6.8e-31 139.0 277 35.4
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 2.3e-23 114.0 315 31.4
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 4.4e-22 109.8 143 41.3
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 2.9e-21 107.1 121 50.4
ATR0421G002 Amborella trichopoda HOM05D006394 ORTHO05D008057 7.0e-20 102.4 106 51.9
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 1.0e-18 98.6 152 38.8
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 3.0e-18 97.1 88 56.8
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 3.6e-16 90.1 155 37.4
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 4.0e-15 86.7 90 52.2
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 8.3e-13 79.0 96 45.8
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 1.6e-11 74.7 70 52.9
TWI34G0224 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 1.6e-08 64.7 136 33.8
ATR0853G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 4.7e-08 63.2 92 46.7
DCAR_009202 Daucus carota HOM05D001564 ORTHO05D001439 4.7e-08 63.2 128 32.8
DCAR_009203 Daucus carota HOM05D001564 ORTHO05D001439 4.7e-08 63.2 128 32.8
Sed0004083 Sechium edule HOM05D001564 ORTHO05D001439 1.4e-07 61.6 138 31.9
MELO3C026642.2 Cucumis melo HOM05D001564 ORTHO05D001439 1.8e-07 61.2 138 31.9
CsaV3_1G029820 Cucumis sativus L. HOM05D001564 ORTHO05D001439 1.8e-07 61.2 138 31.9
Sed0025918 Sechium edule HOM05D001564 ORTHO05D001439 4.0e-07 60.1 138 32.6
TPR.G10349 Trifolium pratense HOM05D001564 ORTHO05D001439 5.2e-07 59.7 138 31.9
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 8.9e-07 58.9 46 56.5
Manes.03G017100 Manihot esculenta HOM05D001564 ORTHO05D001439 4.4e-06 56.6 154 26.6
DCAR_003041 Daucus carota HOM05D001564 ORTHO05D001439 7.6e-06 55.8 143 27.3
Psat1g026920 Pisum sativum HOM05D001564 ORTHO05D001439 9.9e-06 55.5 138 31.2


User provided reference genes

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