Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1124300 Malus domestica HOM05D007821 ORTHO05D009897 3.0e-75 285.0 138 100.0
MD15G1238300 Malus domestica HOM05D007821 ORTHO05D009897 8.8e-67 256.9 138 91.3
Prupe.7G174100 Prunus persica HOM05D007821 ORTHO05D009897 1.2e-52 209.9 139 76.3
RcHm_v2.0_Chr2g0098471 Rosa chinensis HOM05D007821 ORTHO05D009897 4.1e-48 194.9 143 72.0
FvH4_1g11180 Fragaria vesca HOM05D007821 ORTHO05D009897 5.3e-48 194.5 143 72.0
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 5.3e-48 194.5 143 72.0
FAN28G2391 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.6e-47 193.0 143 71.3
FAN23G1973 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.9e-45 186.0 143 69.9
Duzib147G1309 Durio zibethinus HOM05D007821 ORTHO05D009897 5.7e-42 174.5 138 66.7
Thecc.01G012400 Theobroma cacao HOM05D007821 ORTHO05D009897 3.1e-40 168.7 138 64.5
Dinv40139 Davidia involucrata HOM05D007821 ORTHO05D009897 4.1e-40 168.3 138 61.6
Potri.005G108633 Populus trichocarpa HOM05D007821 ORTHO05D009897 7.0e-40 167.5 133 61.7
CiPaw.07G062800 Carya illinoinensis HOM05D007821 ORTHO05D009897 1.2e-39 166.8 138 61.6
Sabra05G0089000 Salix brachista HOM05D006929 ORTHO05D008646 2.7e-39 165.6 134 61.2
QL06p051907 Quercus lobata HOM05D007821 ORTHO05D009897 1.0e-38 163.7 137 62.0
COL.COLO4_22487 Corchorus olitorius HOM05D007821 ORTHO05D009897 3.8e-38 161.8 110 71.8
Gohir.D11G179200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.5e-37 159.8 138 62.3
Gorai.007G191100 Gossypium raimondii HOM05D007821 ORTHO05D009897 1.5e-37 159.8 138 62.3
Hma1.2p1_0315F.1_g122510 Hydrangea macrophylla HOM05D007821 ORTHO05D009897 1.5e-37 159.8 138 56.5
Manes.02G109600 Manihot esculenta HOM05D007821 ORTHO05D009897 1.5e-37 159.8 138 61.6
Cfa007023 Carpinus fangiana HOM05D007821 ORTHO05D009897 7.2e-37 157.5 131 59.5
TWI73G0676 Tripterygium wilfordii HOM05D007821 ORTHO05D009897 2.1e-36 156.0 113 67.3
Lj4g0018241 Lotus japonicus HOM05D007821 ORTHO05D009897 3.6e-36 155.2 138 60.9
Gohir.A11G172200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.4e-35 153.3 138 60.1
Ciclev10026734m.g Citrus clementina HOM05D007821 ORTHO05D009897 1.8e-35 152.9 118 63.6
Actinidia35672 Actinidia chinensis HOM05D007821 ORTHO05D009897 8.8e-35 150.6 140 57.9
Gohir.D10G089100 Gossypium hirsutum HOM05D007821 ORTHO05D009897 2.6e-34 149.1 113 66.4
Gorai.011G098000 Gossypium raimondii HOM05D007821 ORTHO05D009897 2.6e-34 149.1 113 66.4
Gohir.A10G099000 Gossypium hirsutum HOM05D007821 ORTHO05D009897 5.7e-34 147.9 113 66.4
Glyma.02G044900 Glycine max HOM05D007821 ORTHO05D009897 1.7e-33 146.4 104 65.4
TAR376G1238 Trochodendron aralioides HOM05D007821 ORTHO05D009897 2.8e-33 145.6 138 55.1
arahy.Tifrunner.gnm1.ann1.B80PS6 Arachis hypogaea HOM05D007821 ORTHO05D009897 3.7e-33 145.2 111 64.9
VMungo0251G0901 Vigna mungo HOM05D007821 ORTHO05D009897 3.7e-33 145.2 111 64.0
Glyma.16G122400 Glycine max HOM05D007821 ORTHO05D009897 8.3e-33 144.1 104 63.5
Nn5g30827 Nelumbo nucifera HOM05D007821 ORTHO05D009897 8.3e-33 144.1 138 58.0
PGR119G1098 Punica granatum HOM05D007821 ORTHO05D009897 1.4e-32 143.3 136 55.1
Oeu039727.1 Olea europaea HOM05D007821 ORTHO05D009897 5.4e-32 141.4 140 55.0
Phvul.003G266700 Phaseolus vulgaris HOM05D007821 ORTHO05D009897 1.2e-31 140.2 111 64.0
Psat4g102440 Pisum sativum HOM05D007821 ORTHO05D009897 1.2e-31 140.2 134 53.7
DCAR_011577 Daucus carota HOM05D007821 ORTHO05D009897 1.6e-31 139.8 111 62.2
Oeu012560.1 Olea europaea HOM05D007821 ORTHO05D009897 5.9e-31 137.9 111 63.1
Cc07_g11250 Coffea canephora HOM05D007821 ORTHO05D009897 7.7e-31 137.5 142 52.8
FAN26G1107 Fragaria x ananassa HOM05D007821 ORTHO05D009897 2.3e-30 136.0 106 67.0
Medtr8g075000 Medicago truncatula HOM05D007821 ORTHO05D009897 5.0e-30 134.8 118 57.6
Peaxi162Scf00328g00213 Petunia axillaris HOM05D007821 ORTHO05D009897 8.6e-30 134.0 112 60.7
Medtr8g075080 Medicago truncatula HOM05D007821 ORTHO05D009897 3.3e-29 132.1 118 56.8
Nitab4.5_0006899g0050 Nicotiana tabacum HOM05D007821 ORTHO05D009897 3.3e-29 132.1 116 57.8
PSO675G1463 Papaver somniferum HOM05D007821 ORTHO05D009897 9.5e-29 130.6 143 50.3
arahy.Tifrunner.gnm1.ann1.F8FFU1 Arachis hypogaea HOM05D007821 ORTHO05D009897 2.1e-28 129.4 110 58.2
CANSAT01G0454 Cannabis sativa HOM05D007821 ORTHO05D009897 3.6e-28 128.6 118 58.5
Nitab4.5_0016722g0010 Nicotiana tabacum HOM05D007821 ORTHO05D009897 8.0e-28 127.5 116 56.9
Sopen02g028230 Solanum pennellii HOM05D007821 ORTHO05D009897 8.0e-28 127.5 111 59.5
CsaV3_6G047470 Cucumis sativus L. HOM05D007821 ORTHO05D009897 1.8e-27 126.3 114 57.0
GSVIVG01006893001 Vitis vinifera HOM05D007821 ORTHO05D009897 1.8e-27 126.3 112 58.0
Solyc02g083440.3 Solanum lycopersicum HOM05D007821 ORTHO05D009897 3.0e-27 125.6 111 59.5
PGSC0003DMG400003657 Solanum tuberosum HOM05D007821 ORTHO05D009897 3.0e-27 125.6 111 59.5
Aqoxy6G02053 Aquilegia oxysepala HOM05D007821 ORTHO05D009897 5.2e-27 124.8 111 56.8
EL10Ac6g13327 Beta vulgaris HOM05D007821 ORTHO05D009897 6.8e-27 124.4 99 56.6
MELO3C033032.2 Cucumis melo HOM05D007821 ORTHO05D009897 1.5e-26 123.2 144 51.4
PSO541G0785 Papaver somniferum HOM05D007821 ORTHO05D009897 1.5e-26 123.2 145 49.0
CAN.G890.37 Capsicum annuum HOM05D007821 ORTHO05D009897 5.7e-26 121.3 113 57.5
TPR.G19477 Trifolium pratense HOM05D006929 ORTHO05D008646 5.7e-26 121.3 151 45.7
Sed0025726 Sechium edule HOM05D007821 ORTHO05D009897 7.0e-24 114.4 123 49.6
AUR62026417 Chenopodium quinoa HOM05D007821 ORTHO05D009897 5.0e-22 108.2 100 52.0
AUR62026232 Chenopodium quinoa HOM05D007821 ORTHO05D009897 8.6e-22 107.5 115 47.0
Lalb_Chr09g0334261 Lupinus albus HOM05D007821 ORTHO05D009897 1.1e-21 107.1 81 65.4
Atru.chr3.889 Acer truncatum HOM05D007821 ORTHO05D009897 3.6e-20 102.1 96 47.9
Atru.chr3.899 Acer truncatum HOM05D007821 ORTHO05D009897 3.6e-20 102.1 96 47.9
Aa31sc1371G20 Aethionema arabicum HOM05D007821 ORTHO05D009897 2.6e-18 95.9 105 46.7
Eucgr.I02312 Eucalyptus grandis HOM05D007821 ORTHO05D009897 5.8e-18 94.7 142 41.5
Sp5g10860 Schrenkiella parvula HOM05D007821 ORTHO05D009897 2.0e-15 86.3 98 46.9
A01p23500 Brassica napus HOM05D007821 ORTHO05D009897 6.0e-15 84.7 97 47.4
BraA01t02257Z Brassica rapa HOM05D007821 ORTHO05D009897 6.0e-15 84.7 97 47.4
SEGI_40728 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 6.6e-14 81.3 117 41.9
A09p44430 Brassica napus HOM05D007821 ORTHO05D009897 1.1e-13 80.5 98 45.9
BraA09t39902Z Brassica rapa HOM05D007821 ORTHO05D009897 1.1e-13 80.5 98 45.9
C01p29170 Brassica napus HOM05D007821 ORTHO05D009897 1.5e-13 80.1 97 46.4
BolC8t50278H Brassica oleracea HOM05D007821 ORTHO05D009897 1.9e-13 79.7 98 44.9
AL5G31800 Arabidopsis lyrata HOM05D007821 ORTHO05D009897 4.3e-13 78.6 98 43.9
BolC1t02847H Brassica oleracea HOM05D007821 ORTHO05D009897 4.3e-13 78.6 97 46.4
Carub.0005s1774 Capsella rubella HOM05D007821 ORTHO05D009897 4.3e-13 78.6 98 42.9
C08p26640 Brassica napus HOM05D007821 ORTHO05D009897 9.5e-13 77.4 93 47.3
C07p46290 Brassica napus HOM05D007821 ORTHO05D009897 2.8e-12 75.9 102 43.1
HanXRQChr15g0484781 Helianthus annuus HOM05D007821 ORTHO05D009897 1.8e-11 73.2 139 38.1
ECA246G2630 Erigeron canadensis HOM05D007821 ORTHO05D009897 6.8e-11 71.2 118 42.4
SEGI_37570 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 4.4e-10 68.6 118 35.6
Dinv34823 Davidia involucrata HOM05D001188 ORTHO05D001032 2.2e-09 66.2 109 38.5
Mapoly0047s0036 Marchantia polymorpha HOM05D001188 ORTHO05D001032 1.9e-08 63.2 124 34.7
Atru.chr1.1702 Acer truncatum HOM05D001188 ORTHO05D001032 2.4e-08 62.8 109 36.7
SGA_v2.0_scaffold36G14537 Striga asiatica HOM05D001188 ORTHO05D001032 2.4e-08 62.8 106 37.7
CSS0033520 Camellia sinensis var. sinensis HOM05D001188 ORTHO05D001032 7.1e-08 61.2 109 36.7
Cc11_g10110 Coffea canephora HOM05D001188 ORTHO05D001032 7.1e-08 61.2 86 40.7
Ah.03g137620 Amaranthus hybridus HOM05D001188 ORTHO05D001032 9.2e-08 60.8 109 34.9
GSVIVG01011892001 Vitis vinifera HOM05D001188 ORTHO05D001032 1.2e-07 60.5 122 34.4
COL.COLO4_09325 Corchorus olitorius HOM05D001188 ORTHO05D001032 1.6e-07 60.1 123 30.9
Atru.chr11.96 Acer truncatum HOM05D001188 ORTHO05D001032 3.5e-07 58.9 91 40.7
CANSAT78G1507 Cannabis sativa HOM05D001188 ORTHO05D001032 6.0e-07 58.2 98 34.7
Lsat_1_v5_gn_3_59100 Lactuca sativa HOM05D001188 ORTHO05D001032 1.0e-06 57.4 128 34.4
Rhsim10G0067000 Rhododendron simsii HOM05D001188 ORTHO05D001032 1.0e-06 57.4 100 34.0
Glyma.08G365500 Glycine max HOM05D001188 ORTHO05D001032 1.7e-06 56.6 95 35.8
QL02p051463 Quercus lobata HOM05D001188 ORTHO05D001032 1.7e-06 56.6 124 31.5
Hund16155 Selenicereus undatus HOM05D001188 ORTHO05D001032 1.7e-06 56.6 129 34.1
Gohir.D06G049000 Gossypium hirsutum HOM05D001188 ORTHO05D001032 2.3e-06 56.2 134 32.8
Gorai.010G055500 Gossypium raimondii HOM05D001188 ORTHO05D001032 2.3e-06 56.2 134 32.8
vmacro01387 Vaccinium macrocarpon HOM05D001188 ORTHO05D001032 2.3e-06 56.2 113 31.9
vmacro05558 Vaccinium macrocarpon HOM05D001188 ORTHO05D001032 2.3e-06 56.2 123 32.5
Cpa.g.sc282.12 Carica papaya HOM05D001188 ORTHO05D001032 3.0e-06 55.8 95 37.9
CDE06G1178 Ceratophyllum demersum HOM05D001188 ORTHO05D001032 3.0e-06 55.8 105 38.1
Actinidia16655 Actinidia chinensis HOM05D001188 ORTHO05D001032 3.9e-06 55.5 126 33.3
Ciclev10022616m.g Citrus clementina HOM05D001188 ORTHO05D001032 3.9e-06 55.5 102 34.3
FAN07G2096 Fragaria x ananassa HOM05D001188 ORTHO05D001032 3.9e-06 55.5 114 35.1
Peaxi162Scf00382g00824 Petunia axillaris HOM05D001188 ORTHO05D001032 3.9e-06 55.5 83 38.6
Prupe.1G311700 Prunus persica HOM05D001188 ORTHO05D001032 3.9e-06 55.5 114 33.3
CiPaw.04G042000 Carya illinoinensis HOM05D001188 ORTHO05D001032 5.1e-06 55.1 109 33.9
CDE07G1812 Ceratophyllum demersum HOM05D001188 ORTHO05D001032 5.1e-06 55.1 102 36.3
MD16G1042400 Malus domestica HOM05D001188 ORTHO05D001032 5.1e-06 55.1 100 36.0
Sabra15G0073800 Salix brachista HOM05D001188 ORTHO05D001032 5.1e-06 55.1 94 39.4
EL10Ac2g04580 Beta vulgaris HOM05D001188 ORTHO05D001032 6.6e-06 54.7 102 36.3
AUR62035213 Chenopodium quinoa HOM05D001188 ORTHO05D001032 6.6e-06 54.7 143 29.4
Sabra15G0049600 Salix brachista HOM05D001188 ORTHO05D001032 6.6e-06 54.7 84 40.5
Lj6A758T16 Lonicera japonica HOM05D001188 ORTHO05D001032 8.6e-06 54.3 97 38.1
vmacro17716 Vaccinium macrocarpon HOM05D001188 ORTHO05D001032 8.6e-06 54.3 94 39.4
VMungo1383G2605 Vigna mungo HOM05D001188 ORTHO05D001032 8.6e-06 54.3 95 35.8


User provided reference genes

Program Settings