Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 0.0e+00 1117.8 778 100.0
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 3.5e-298 1028.1 781 86.8
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 2.4e-246 855.9 779 74.2
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.4e-238 829.3 775 76.4
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.0e-226 787.7 775 74.5
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 5.8e-224 781.6 778 72.2
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.1e-222 775.4 779 72.3
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.1e-219 767.3 792 66.4
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 3.9e-212 742.3 793 70.0
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 9.9e-208 727.6 769 67.5
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 8.7e-204 714.5 801 64.0
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 6.9e-201 704.9 796 63.3
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 7.6e-192 674.9 793 63.4
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.2e-191 673.3 733 64.1
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 8.4e-191 671.4 733 63.8
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 9.3e-190 667.9 793 62.9
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 7.9e-189 664.8 770 63.1
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 7.4e-187 658.3 789 66.0
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 3.0e-180 636.3 765 58.6
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 3.9e-180 636.0 788 59.6
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.6e-179 632.1 792 53.9
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 4.8e-178 629.0 786 63.9
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 3.4e-176 622.9 789 56.8
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.3e-175 620.9 764 59.2
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.7e-175 620.5 789 54.8
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 1.7e-175 620.5 793 57.8
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 2.2e-175 620.2 760 63.9
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 9.3e-174 614.8 794 61.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 1.2e-173 614.4 784 62.8
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.1e-173 613.6 784 62.8
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.7e-173 613.2 770 57.8
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.9e-171 607.1 738 56.1
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 9.7e-171 604.7 781 62.1
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 9.7e-171 604.7 784 58.4
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 3.7e-170 602.8 781 59.0
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 3.1e-169 599.7 769 53.8
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 2.0e-168 597.0 793 64.3
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 2.6e-168 596.7 800 54.9
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.9e-166 590.5 786 61.7
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 5.5e-166 589.0 773 57.8
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 2.7e-165 586.6 784 54.6
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 4.6e-165 585.9 791 60.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 4.6e-165 585.9 791 60.4
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 6.1e-165 585.5 788 57.6
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.3e-164 583.6 791 56.5
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.5e-163 580.9 782 56.1
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.5e-163 580.1 787 57.4
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 3.7e-162 576.2 767 64.8
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 3.4e-160 569.7 512 64.8
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.5e-160 569.3 789 59.8
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 5.0e-159 565.8 845 56.7
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 6.5e-159 565.5 771 55.8
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.7e-157 560.1 798 55.8
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.8e-156 557.4 771 60.6
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 2.0e-155 553.9 795 61.0
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.4e-153 547.7 818 60.8
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 3.1e-153 546.6 806 53.5
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.5e-152 544.3 737 59.7
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 2.0e-152 543.9 737 59.7
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.0e-152 543.9 786 53.4
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 2.6e-152 543.5 794 54.5
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.0e-151 541.6 737 58.5
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.1e-150 538.1 788 52.5
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.9e-150 537.3 759 52.4
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 2.5e-150 537.0 788 52.9
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 7.2e-150 535.4 788 55.8
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.6e-149 534.3 744 57.5
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.6e-149 533.1 768 58.7
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.8e-148 530.8 744 57.4
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 3.0e-148 530.0 748 56.1
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.5e-147 527.7 789 49.6
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.6e-147 526.9 755 55.9
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 4.4e-147 526.2 745 52.3
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 5.7e-147 525.8 754 56.0
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 3.1e-145 520.0 762 52.2
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 9.1e-145 518.5 771 53.3
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.7e-143 514.2 759 56.5
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 7.2e-142 508.8 752 51.9
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.1e-141 507.3 785 52.6
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.1e-141 507.3 799 47.8
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 2.3e-140 503.8 790 54.7
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 5.7e-139 499.2 792 53.7
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 8.2e-138 495.4 750 53.9
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.1e-137 495.0 793 52.1
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.3e-135 488.0 788 49.1
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.3e-132 477.2 790 51.3
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 5.2e-132 476.1 769 47.3
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.2e-130 470.7 784 54.7
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.9e-127 460.3 774 46.5
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 3.3e-126 456.8 791 54.9
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 5.5e-126 456.1 586 59.0
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.5e-118 430.6 739 47.5
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.6e-117 427.9 788 44.5
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 8.9e-116 422.2 784 46.7
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 7.5e-115 419.1 761 49.1
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 3.7e-114 416.8 557 70.0
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 1.2e-109 401.7 556 66.9
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 6.8e-108 396.0 786 51.0
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 7.5e-107 392.5 420 64.3
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 3.9e-103 380.2 760 49.1
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 1.6e-101 374.8 787 42.2
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 4.7e-93 346.7 766 35.2
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 6.6e-79 299.7 751 38.2
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 8.7e-79 299.3 264 62.9
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 6.2e-77 293.1 254 64.2
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 8.1e-77 292.7 190 86.3
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 5.8e-75 286.6 669 34.4
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.3e-71 275.4 707 32.4
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 4.9e-66 256.9 193 72.5
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.1e-57 229.2 466 59.2
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.2e-56 225.7 179 69.3
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.6e-51 208.0 132 86.4
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 5.5e-49 200.3 668 31.7
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 3.9e-47 194.1 123 87.8
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.3e-45 189.1 211 59.2
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 6.3e-45 186.8 137 81.8
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 5.0e-42 177.2 256 67.6
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.9e-41 175.3 180 58.3
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.8e-37 160.6 168 57.7
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-37 160.6 265 41.9
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.4e-36 159.1 166 60.8
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.3e-34 152.5 328 48.8
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 8.0e-32 143.3 281 60.5
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 7.5e-22 110.2 84 66.7
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 1.7e-21 109.0 264 50.8
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 2.4e-20 105.1 95 70.5
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.5e-17 95.1 79 70.9
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.6e-16 92.4 56 89.3
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 2.1e-16 92.0 127 48.0
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 5.2e-15 87.4 75 66.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 3.4e-14 84.7 55 80.0
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 4.4e-14 84.3 259 48.6
CDE06G1033 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.4e-12 77.4 68 57.4
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 5.0e-10 70.9 47 78.7
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 4.2e-09 67.8 51 66.7
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 7.2e-09 67.0 101 41.6
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 2.8e-08 65.1 75 46.7
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 6.1e-08 63.9 52 73.1
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 6.1e-08 63.9 66 56.1
Oeu020654.1 Olea europaea HOM05D001343 ORTHO05D007223 2.3e-07 62.0 46 69.6
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.2e-07 60.8 136 39.0
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 5.2e-07 60.8 71 43.7
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.5e-06 59.3 46 67.4
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.5e-06 59.3 46 67.4


User provided reference genes

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