Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 7.5e-94 347.1 160 100.0
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 8.6e-66 253.8 156 76.3
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 9.5e-65 250.4 155 76.8
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.6e-64 249.6 155 75.5
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.2e-54 216.9 155 65.2
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-54 216.9 155 65.2
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.5e-54 216.5 155 65.8
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.5e-54 214.2 155 64.5
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.5e-54 214.2 155 64.5
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.9e-53 211.5 155 63.9
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.2e-52 208.8 155 63.2
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.1e-52 207.6 156 62.8
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.2e-51 206.8 155 63.2
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.7e-51 205.7 155 63.9
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.0e-50 203.8 155 62.6
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.3e-50 202.6 155 60.6
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 2.3e-50 202.6 155 63.2
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 3.0e-50 202.2 156 64.1
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 3.9e-50 201.8 171 58.5
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.1e-50 201.4 155 61.9
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 5.1e-50 201.4 165 60.0
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.5e-49 199.9 155 61.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.5e-49 199.9 155 61.3
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.9e-49 199.5 153 61.4
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.9e-49 199.5 155 61.3
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.5e-49 199.1 155 61.9
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.6e-49 198.0 143 60.8
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 7.3e-49 197.6 155 61.9
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 7.3e-49 197.6 155 61.9
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.8e-48 195.7 155 60.0
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 3.6e-48 195.3 155 61.3
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 3.6e-48 195.3 155 61.3
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.7e-48 194.9 155 58.7
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 8.1e-48 194.1 155 59.4
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.1e-47 193.7 155 60.0
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.1e-47 193.7 155 60.6
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.8e-47 193.0 155 58.7
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.4e-47 192.6 156 58.3
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.0e-47 191.8 155 59.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 5.2e-47 191.4 155 58.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 6.8e-47 191.0 155 59.4
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 8.9e-47 190.7 154 57.1
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 8.9e-47 190.7 155 58.1
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.2e-46 190.3 155 57.4
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.5e-46 189.9 155 59.4
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.6e-46 189.1 122 76.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 4.4e-46 188.3 156 59.0
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 7.6e-46 187.6 155 58.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 7.6e-46 187.6 155 57.4
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 9.9e-46 187.2 155 58.1
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 1.3e-45 186.8 155 56.8
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.3e-45 186.8 155 58.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.3e-45 186.8 155 56.8
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.7e-45 186.4 155 60.0
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.7e-45 186.4 158 57.0
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 2.2e-45 186.0 155 58.1
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 2.9e-45 185.7 157 60.5
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 4.9e-45 184.9 155 58.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 4.9e-45 184.9 149 59.1
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 6.4e-45 184.5 155 57.4
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.4e-45 184.1 158 55.7
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 3.2e-44 182.2 157 58.6
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.2e-44 182.2 157 59.2
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.2e-44 181.8 158 55.1
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 7.1e-44 181.0 149 56.4
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 9.2e-44 180.6 158 56.3
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 9.2e-44 180.6 158 54.4
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.2e-43 180.3 156 58.3
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.6e-43 179.9 158 55.1
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.6e-43 179.9 155 54.8
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 2.1e-43 179.5 157 59.2
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.7e-43 179.1 118 66.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.3e-42 176.8 155 56.8
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.3e-42 176.0 157 58.0
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 6.6e-42 174.5 115 64.3
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.7e-42 174.1 155 53.5
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.7e-42 174.1 159 55.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.6e-41 171.4 155 52.9
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.6e-41 170.6 155 52.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.2e-40 170.2 141 56.0
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.8e-40 169.1 156 53.2
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 3.6e-40 168.7 159 50.3
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 4.7e-40 168.3 157 53.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 4.7e-40 168.3 157 54.1
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 4.7e-40 168.3 186 46.8
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.1e-40 167.5 159 52.8
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.1e-39 167.2 158 51.9
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.4e-39 166.8 155 54.8
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.4e-39 166.0 157 54.1
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 6.9e-39 164.5 157 54.1
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.2e-38 163.7 155 52.9
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.0e-38 162.9 160 52.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.0e-38 162.9 155 51.0
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.0e-38 162.9 157 53.5
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 2.0e-38 162.9 155 52.3
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.6e-38 162.5 155 51.6
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.6e-38 162.5 156 53.8
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 2.6e-38 162.5 155 53.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 3.4e-38 162.2 155 48.4
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 5.8e-38 161.4 154 52.6
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 9.9e-38 160.6 157 52.9
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.2e-37 159.5 153 51.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 2.2e-37 159.5 153 51.6
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.2e-37 159.5 153 51.6
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 4.9e-37 158.3 153 51.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.4e-36 156.8 154 52.6
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 5.4e-36 154.8 158 51.9
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 7.1e-36 154.5 162 51.9
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 4.6e-35 151.8 158 50.6
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 6.0e-35 151.4 156 46.8
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.3e-34 150.2 155 46.5
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.7e-34 149.8 158 52.5
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.3e-33 145.6 114 57.9
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 5.6e-33 144.8 155 46.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 9.6e-33 144.1 155 48.4
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.3e-32 143.7 112 59.8
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.3e-32 143.7 114 57.9
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.4e-31 139.4 155 41.3
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.6e-30 136.0 159 43.4
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.7e-29 133.3 167 41.3
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 8.4e-29 131.0 160 41.2
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.2e-27 127.1 158 42.4
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.3e-26 123.6 134 51.5
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 6.7e-26 121.3 61 90.2
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.1e-25 120.6 133 47.4
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.7e-21 106.7 110 46.4
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 3.0e-18 95.9 49 79.6
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.1e-17 94.0 117 44.4
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 8.2e-16 87.8 139 35.3
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.1e-15 87.4 96 41.7
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.5e-09 67.0 181 28.2


User provided reference genes

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