Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 1.4e-53 212.6 104 100.0
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 3.3e-18 95.1 173 39.3
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 3.1e-16 88.6 170 37.1
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 1.2e-15 86.7 174 36.2
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 2.0e-15 85.9 172 36.0
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 7.7e-15 84.0 172 34.3
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 2.9e-14 82.0 172 34.3
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.8e-14 81.6 172 33.7
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 1.1e-13 80.1 52 78.8
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 1.4e-13 79.7 174 34.5
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 2.5e-13 79.0 171 33.3
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 4.2e-13 78.2 172 33.7
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 7.2e-13 77.4 175 32.0
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 1.2e-12 76.6 171 33.9
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 1.2e-12 76.6 46 73.9
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 1.6e-12 76.3 172 32.6
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 2.1e-12 75.9 174 32.8
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 2.1e-12 75.9 54 64.8
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 2.1e-12 75.9 54 64.8
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 2.7e-12 75.5 171 31.6
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 3.6e-12 75.1 174 33.3
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 3.6e-12 75.1 46 73.9
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 4.6e-12 74.7 172 34.3
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 4.6e-12 74.7 173 32.4
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 6.1e-12 74.3 174 32.8
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 7.9e-12 73.9 46 73.9
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 1.0e-11 73.6 51 62.7
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 1.0e-11 73.6 171 30.4
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 1.0e-11 73.6 46 71.7
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 1.0e-11 73.6 175 31.4
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 1.0e-11 73.6 172 32.0
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 1.4e-11 73.2 171 31.6
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 2.3e-11 72.4 173 30.6
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 2.3e-11 72.4 46 71.7
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 3.9e-11 71.6 46 73.9
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 3.9e-11 71.6 174 33.3
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 3.9e-11 71.6 46 69.6
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 3.9e-11 71.6 52 65.4
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 5.1e-11 71.2 52 61.5
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 6.7e-11 70.9 174 29.3
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 6.7e-11 70.9 52 63.5
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 8.8e-11 70.5 171 30.4
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 8.8e-11 70.5 171 29.8
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 8.8e-11 70.5 46 71.7
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 1.1e-10 70.1 52 61.5
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.1e-10 70.1 171 30.4
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.5e-10 69.7 174 31.0
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 1.5e-10 69.7 46 65.2
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 2.0e-10 69.3 46 65.2
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 2.0e-10 69.3 52 59.6
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 2.0e-10 69.3 52 59.6
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 2.0e-10 69.3 171 31.6
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 2.0e-10 69.3 174 31.0
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 2.5e-10 68.9 174 28.7
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.5e-10 68.9 46 63.0
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 3.3e-10 68.6 52 61.5
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 3.3e-10 68.6 171 28.7
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 3.3e-10 68.6 46 60.9
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 3.3e-10 68.6 46 60.9
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 4.3e-10 68.2 46 63.0
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 4.3e-10 68.2 46 65.2
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 5.7e-10 67.8 174 29.3
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 5.7e-10 67.8 174 29.3
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 5.7e-10 67.8 174 29.3
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 5.7e-10 67.8 52 57.7
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 7.4e-10 67.4 47 57.4
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 7.4e-10 67.4 175 27.4
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.3e-09 66.6 174 28.2
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 1.3e-09 66.6 44 61.4
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 1.7e-09 66.2 52 59.6
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 8.2e-09 63.9 46 56.5
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 1.1e-08 63.5 52 55.8
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 2.4e-08 62.4 164 29.3
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 2.4e-08 62.4 164 28.7
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.4e-08 62.4 44 54.5
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 5.3e-08 61.2 40 67.5
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 9.1e-08 60.5 44 59.1
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 2.0e-07 59.3 52 55.8
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 2.6e-07 58.9 46 60.9
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 3.4e-07 58.5 46 56.5
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 5.9e-07 57.8 35 68.6
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 1.7e-06 56.2 45 64.4
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 6.5e-06 54.3 36 66.7
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 6.5e-06 54.3 36 66.7


User provided reference genes

Program Settings