Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 9.5e-104 380.2 191 100.0
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 2.7e-82 308.9 191 81.2
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 5.6e-80 301.2 191 78.5
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.2e-77 293.5 191 77.5
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.8e-76 288.5 191 77.0
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.2e-75 285.4 191 76.4
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.2e-75 285.4 191 76.4
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 5.4e-75 284.6 190 76.3
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.6e-74 283.1 191 75.9
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 3.8e-68 261.9 165 83.0
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 7.4e-64 247.7 191 68.1
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 9.6e-64 247.3 191 68.1
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 9.0e-62 240.7 189 66.1
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 1.4e-59 233.4 189 63.0
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 1.2e-58 230.3 189 61.9
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 4.6e-58 228.4 189 63.5
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 1.0e-57 227.3 183 63.4
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 3.9e-57 225.3 190 62.1
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 1.1e-56 223.8 188 62.8
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.5e-56 223.4 138 80.4
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 1.9e-56 223.0 143 78.3
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 1.9e-56 223.0 192 63.5
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 3.3e-56 222.2 189 60.3
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 1.3e-55 220.3 171 68.4
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 2.8e-55 219.2 172 67.4
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 3.7e-55 218.8 195 60.0
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 4.8e-55 218.4 191 62.8
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 8.1e-55 217.6 140 77.9
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 1.4e-54 216.9 189 61.4
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.8e-54 216.5 189 60.3
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 2.4e-54 216.1 189 59.8
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 6.9e-54 214.5 131 76.3
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 9.0e-54 214.2 150 73.3
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 2.6e-53 212.6 189 58.7
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 3.4e-53 212.2 127 79.5
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 4.5e-53 211.8 182 61.0
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 5.8e-53 211.5 163 65.0
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 7.6e-53 211.1 161 68.3
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 1.0e-52 210.7 141 72.3
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 2.9e-52 209.1 133 76.7
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 8.4e-52 207.6 133 75.9
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 3.2e-51 205.7 121 81.0
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 3.2e-51 205.7 174 64.9
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 5.5e-51 204.9 152 67.8
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.5e-51 204.9 153 68.0
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 5.5e-51 204.9 189 58.2
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.2e-50 203.8 142 73.2
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.6e-50 203.4 136 74.3
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 1.6e-50 203.4 150 69.3
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 2.7e-50 202.6 141 70.9
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 1.3e-49 200.3 125 76.0
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 2.3e-49 199.5 176 62.5
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 5.1e-49 198.4 136 71.3
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 6.7e-49 198.0 174 60.3
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 1.1e-48 197.2 180 61.1
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 1.1e-48 197.2 152 63.8
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 1.9e-48 196.4 140 72.9
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 5.7e-48 194.9 107 86.9
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 7.4e-48 194.5 132 75.0
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 7.4e-48 194.5 132 75.0
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 7.4e-48 194.5 193 58.0
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 9.6e-48 194.1 112 80.4
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.3e-47 193.7 132 75.0
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.3e-47 193.7 132 75.0
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 1.3e-47 193.7 175 62.9
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 2.1e-47 193.0 148 66.9
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 2.8e-47 192.6 140 71.4
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 6.3e-47 191.4 130 73.1
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 6.3e-47 191.4 179 60.3
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 6.3e-47 191.4 179 60.3
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 6.3e-47 191.4 142 66.9
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 8.2e-47 191.0 132 73.5
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 8.2e-47 191.0 203 55.7
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 1.1e-46 190.7 155 63.2
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.4e-46 190.3 179 60.9
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.8e-46 189.9 140 69.3
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 1.8e-46 189.9 132 72.7
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 2.4e-46 189.5 155 67.7
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 6.9e-46 188.0 142 66.2
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 9.0e-46 187.6 119 76.5
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 9.0e-46 187.6 173 58.4
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.2e-45 187.2 136 68.4
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.2e-45 187.2 146 67.1
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 2.0e-45 186.4 147 66.0
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 2.0e-45 186.4 143 64.3
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.6e-45 186.0 146 66.4
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 2.6e-45 186.0 198 52.5
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 2.6e-45 186.0 153 65.4
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 3.4e-45 185.7 137 70.1
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 7.6e-45 184.5 159 61.6
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 1.7e-44 183.3 143 66.4
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 1.7e-44 183.3 143 66.4
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 3.8e-44 182.2 113 77.0
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 5.0e-44 181.8 126 71.4
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 6.5e-44 181.4 131 73.3
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 8.5e-44 181.0 146 60.3
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 4.2e-43 178.7 140 65.7
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 5.5e-43 178.3 166 59.6
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 3.6e-42 175.6 148 64.2
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 3.6e-42 175.6 148 64.2
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 1.0e-41 174.1 114 78.1
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.3e-41 173.7 135 66.7
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 3.9e-41 172.2 116 69.8
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 6.3e-39 164.9 136 64.0
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 6.3e-39 164.9 141 62.4
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 8.2e-39 164.5 115 67.0
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 2.2e-36 156.4 88 83.0
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 1.4e-35 153.7 95 75.8
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 1.4e-35 153.7 126 64.3
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 9.4e-35 151.0 164 51.2
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.6e-34 150.2 126 60.3
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 1.4e-33 147.1 110 63.6
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 5.1e-33 145.2 132 56.8
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 1.5e-32 143.7 134 53.0
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.0e-32 143.3 112 67.0
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 6.9e-30 134.8 125 55.2
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 5.5e-27 125.2 152 42.1
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 3.9e-25 119.0 147 40.8
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 7.2e-19 98.2 134 41.8
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 3.0e-17 92.8 91 57.1
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.7e-15 87.0 98 45.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.2e-15 86.7 51 82.4
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.6e-10 69.3 61 55.7
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 9.8e-08 61.2 81 43.2


User provided reference genes

Program Settings