Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 1.2e-129 466.5 234 100.0
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 5.6e-122 441.0 234 94.4
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.2e-119 433.3 234 93.2
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.5e-119 433.0 241 88.8
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.4e-117 424.5 234 89.7
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 7.0e-117 424.1 234 89.7
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 7.0e-117 424.1 234 89.7
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.0e-116 422.5 234 88.9
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.5e-116 421.8 234 88.9
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.5e-116 421.8 234 88.9
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 8.6e-115 417.2 238 87.8
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 5.6e-114 414.5 234 88.5
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 9.5e-114 413.7 234 87.2
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.1e-113 412.5 238 86.6
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 2.8e-113 412.1 234 87.2
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 3.6e-113 411.8 236 86.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 6.2e-113 411.0 232 86.6
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.8e-112 409.5 234 86.3
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.8e-112 409.5 232 87.1
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 2.3e-112 409.1 234 86.8
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 3.1e-112 408.7 234 86.8
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 4.0e-112 408.3 234 85.5
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 4.0e-112 408.3 242 84.7
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.2e-111 406.8 234 86.8
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 1.5e-111 406.4 239 84.9
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 2.6e-111 405.6 234 85.9
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 3.4e-111 405.2 239 84.9
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 4.4e-111 404.8 234 85.9
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 5.8e-111 404.4 234 85.9
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 5.8e-111 404.4 234 84.2
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 5.8e-111 404.4 232 85.8
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.2e-110 402.5 239 84.1
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 2.2e-110 402.5 230 86.5
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 3.7e-110 401.7 234 83.8
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 4.9e-110 401.4 232 85.3
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 4.9e-110 401.4 234 85.0
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 6.4e-110 401.0 238 84.9
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 3.2e-109 398.7 234 83.8
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 4.1e-109 398.3 234 83.8
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 4.1e-109 398.3 234 84.6
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 7.0e-109 397.5 227 84.6
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 9.2e-109 397.1 234 84.6
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 1.2e-108 396.7 234 84.2
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 2.0e-108 396.0 235 83.0
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.5e-108 395.2 234 83.3
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 7.8e-108 394.0 234 83.3
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 7.8e-108 394.0 232 82.8
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 1.7e-107 392.9 234 80.3
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 1.7e-107 392.9 240 82.1
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 2.3e-107 392.5 234 82.1
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 2.3e-107 392.5 233 83.7
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 8.6e-107 390.6 236 82.2
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 8.6e-107 390.6 249 80.3
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 3.3e-106 388.7 224 83.0
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 3.3e-106 388.7 224 83.0
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 4.3e-106 388.3 234 82.5
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 4.3e-106 388.3 234 82.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 4.3e-106 388.3 239 79.1
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 7.3e-106 387.5 240 79.6
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 7.3e-106 387.5 234 82.5
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 7.3e-106 387.5 236 81.8
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 1.6e-105 386.3 234 80.8
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 2.8e-105 385.6 225 81.3
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 4.7e-105 384.8 234 81.2
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 8.1e-105 384.0 225 81.3
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.1e-104 383.6 236 80.5
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.8e-104 382.9 235 81.3
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 3.1e-104 382.1 228 82.5
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 4.0e-104 381.7 225 80.4
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 6.8e-104 380.9 234 79.5
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 8.9e-104 380.6 240 76.7
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 1.5e-103 379.8 234 79.5
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 4.4e-103 378.3 238 78.2
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 1.3e-102 376.7 234 78.6
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.7e-102 376.3 240 77.9
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 2.2e-102 375.9 234 78.6
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 4.9e-102 374.8 232 79.3
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 1.9e-101 372.9 234 78.6
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.2e-101 372.1 223 80.3
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 9.2e-101 370.5 234 77.8
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 9.2e-101 370.5 234 77.8
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.2e-100 370.2 234 76.1
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 1.6e-100 369.8 234 76.9
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 3.5e-100 368.6 238 77.3
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 3.5e-100 368.6 217 82.5
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 4.6e-100 368.2 227 77.1
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 4.6e-100 368.2 227 77.1
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 6.0e-100 367.9 234 77.4
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 7.8e-100 367.5 235 76.2
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 7.8e-100 367.5 240 75.4
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 7.8e-100 367.5 225 79.1
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 1.0e-99 367.1 227 78.9
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.3e-99 366.7 234 80.8
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 2.3e-99 365.9 234 76.9
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 2.3e-99 365.9 235 76.2
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.3e-99 365.9 227 78.4
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 3.0e-99 365.5 234 78.2
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 6.6e-99 364.4 228 76.8
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.1e-98 363.6 234 73.9
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.9e-98 362.8 235 76.6
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.6e-97 359.8 227 77.1
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 2.8e-97 359.0 234 76.5
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 4.7e-97 358.2 235 76.6
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 8.1e-97 357.5 304 61.8
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 8.1e-97 357.5 226 77.0
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 8.9e-96 354.0 321 60.4
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 2.2e-94 349.4 258 67.8
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 2.2e-94 349.4 227 74.9
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.1e-93 347.1 187 89.8
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 4.6e-92 341.7 234 73.5
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 1.3e-91 340.1 240 73.3
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 2.3e-91 339.3 223 70.4
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.1e-90 337.0 201 83.6
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 5.2e-88 328.2 234 70.5
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.4e-87 325.5 192 81.2
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 3.4e-87 325.5 198 79.8
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 4.4e-87 325.1 234 69.7
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 1.7e-86 323.2 234 68.4
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.9e-85 319.7 228 67.1
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.9e-85 319.7 228 66.7
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 2.3e-83 312.8 235 69.4
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 1.9e-82 309.7 227 63.4
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 2.5e-82 309.3 193 76.7
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.1e-80 302.4 199 76.4
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 3.3e-74 282.3 197 70.6
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.3e-73 280.4 168 79.2
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.6e-68 263.5 226 61.5
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 6.7e-67 258.1 162 78.4
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 9.6e-58 227.6 154 68.2
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 3.8e-54 215.7 217 50.2
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 1.9e-45 186.8 119 72.3
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.9e-37 160.2 105 78.1
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 5.5e-37 158.7 201 38.3
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 1.5e-34 150.6 97 82.5
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.2e-23 114.4 168 36.3
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 2.0e-10 70.5 74 47.3


User provided reference genes

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