Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1087600 Malus domestica HOM05D004130 ORTHO05D004705 6.9e-30 133.3 65 100.0
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 3.9e-17 90.9 49 87.8
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 4.8e-15 84.0 48 81.2
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 6.9e-14 80.1 41 85.4
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.2e-13 79.3 49 79.6
GSVIVG01015105001 Vitis vinifera HOM05D004130 ORTHO05D004705 5.9e-13 77.0 41 82.9
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 1.0e-12 76.3 49 73.5
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 1.0e-12 76.3 40 85.0
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.0e-12 76.3 40 85.0
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.0e-12 76.3 40 85.0
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 1.7e-12 75.5 49 75.5
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.7e-12 75.5 49 71.4
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 2.2e-12 75.1 49 75.5
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.9e-12 74.7 40 82.5
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 3.8e-12 74.3 49 69.4
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 3.8e-12 74.3 49 67.3
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 3.8e-12 74.3 41 78.0
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 3.8e-12 74.3 41 78.0
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 3.8e-12 74.3 49 71.4
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 3.8e-12 74.3 49 75.5
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 6.5e-12 73.6 40 82.5
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 8.4e-12 73.2 39 79.5
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 8.4e-12 73.2 39 79.5
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 8.4e-12 73.2 47 68.1
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 1.1e-11 72.8 47 70.2
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.4e-11 72.4 40 77.5
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.4e-11 72.4 48 66.7
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 1.9e-11 72.0 48 68.8
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 1.9e-11 72.0 40 80.0
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 1.9e-11 72.0 48 66.7
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 2.5e-11 71.6 49 71.4
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 2.5e-11 71.6 49 67.3
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 2.5e-11 71.6 47 68.1
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.5e-11 71.6 47 70.2
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 3.2e-11 71.2 36 86.1
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 3.2e-11 71.2 46 69.6
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 3.2e-11 71.2 48 70.8
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 4.2e-11 70.9 47 72.3
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 4.2e-11 70.9 41 75.6
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 4.2e-11 70.9 48 70.8
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 5.5e-11 70.5 48 70.8
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 5.5e-11 70.5 47 70.2
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 5.5e-11 70.5 48 68.8
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 5.5e-11 70.5 49 67.3
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 5.5e-11 70.5 48 68.8
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 7.2e-11 70.1 49 69.4
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 7.2e-11 70.1 48 68.8
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 7.2e-11 70.1 41 75.6
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 9.3e-11 69.7 49 67.3
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 9.3e-11 69.7 49 67.3
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 9.3e-11 69.7 47 70.2
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 9.3e-11 69.7 40 77.5
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 9.3e-11 69.7 40 77.5
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 9.3e-11 69.7 49 67.3
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 9.3e-11 69.7 49 67.3
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.2e-10 69.3 48 68.8
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.2e-10 69.3 49 65.3
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.2e-10 69.3 49 65.3
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.2e-10 69.3 49 65.3
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 1.2e-10 69.3 49 69.4
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 1.2e-10 69.3 47 68.1
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 1.2e-10 69.3 47 66.0
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.2e-10 69.3 35 85.7
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 1.2e-10 69.3 40 75.0
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 1.2e-10 69.3 46 67.4
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 1.2e-10 69.3 49 67.3
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 1.2e-10 69.3 49 67.3
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 1.2e-10 69.3 48 66.7
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.6e-10 68.9 47 68.1
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 1.6e-10 68.9 47 68.1
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 1.6e-10 68.9 47 68.1
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 1.6e-10 68.9 47 68.1
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 1.6e-10 68.9 47 68.1
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 1.6e-10 68.9 47 68.1
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 2.1e-10 68.6 49 67.3
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 2.1e-10 68.6 40 77.5
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 2.1e-10 68.6 47 68.1
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 2.1e-10 68.6 40 75.0
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 2.1e-10 68.6 49 67.3
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 2.1e-10 68.6 49 67.3
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 2.1e-10 68.6 48 66.7
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 2.1e-10 68.6 49 67.3
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.1e-10 68.6 40 75.0
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 2.7e-10 68.2 49 65.3
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 2.7e-10 68.2 49 65.3
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 2.7e-10 68.2 47 63.8
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 2.7e-10 68.2 40 75.0
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 2.7e-10 68.2 40 75.0
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 2.7e-10 68.2 40 72.5
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 2.7e-10 68.2 47 66.0
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 2.7e-10 68.2 47 70.2
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 3.5e-10 67.8 40 75.0
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 3.5e-10 67.8 40 75.0
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 3.5e-10 67.8 47 66.0
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 3.5e-10 67.8 47 66.0
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 3.5e-10 67.8 49 67.3
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 3.5e-10 67.8 38 78.9
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 3.5e-10 67.8 38 78.9
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 3.5e-10 67.8 47 68.1
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 3.5e-10 67.8 49 65.3
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 3.5e-10 67.8 40 75.0
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 3.5e-10 67.8 48 66.7
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 3.5e-10 67.8 49 63.3
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 3.5e-10 67.8 47 66.0
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 4.6e-10 67.4 41 75.6
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 4.6e-10 67.4 49 65.3
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 4.6e-10 67.4 40 72.5
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 4.6e-10 67.4 40 75.0
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 4.6e-10 67.4 40 72.5
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 4.6e-10 67.4 40 72.5
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 4.6e-10 67.4 40 75.0
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 4.6e-10 67.4 41 70.7
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 4.6e-10 67.4 40 75.0
Actinidia32778 Actinidia chinensis HOM05D004130 ORTHO05D004705 6.1e-10 67.0 68 50.0
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 6.1e-10 67.0 49 63.3
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 6.1e-10 67.0 47 63.8
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 7.9e-10 66.6 47 66.0
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 7.9e-10 66.6 48 64.6
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 7.9e-10 66.6 48 64.6
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 1.0e-09 66.2 49 63.3
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 1.3e-09 65.9 49 61.2
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.3e-09 65.9 40 75.0
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 1.3e-09 65.9 40 75.0
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 1.8e-09 65.5 47 66.0
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 2.3e-09 65.1 49 63.3
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 2.3e-09 65.1 40 72.5
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 3.0e-09 64.7 47 66.0
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 3.0e-09 64.7 47 66.0
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 3.0e-09 64.7 40 70.0
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 3.0e-09 64.7 40 70.0
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 3.0e-09 64.7 40 70.0
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 3.9e-09 64.3 41 68.3
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 3.9e-09 64.3 49 63.3
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 3.9e-09 64.3 40 70.0
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 5.1e-09 63.9 49 59.2
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 6.7e-09 63.5 49 63.3
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 6.7e-09 63.5 47 63.8
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 6.7e-09 63.5 47 63.8
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 6.7e-09 63.5 47 63.8
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 6.7e-09 63.5 49 61.2
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 8.7e-09 63.2 40 70.0
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 8.7e-09 63.2 40 70.0
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 1.1e-08 62.8 47 63.8
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 1.1e-08 62.8 49 61.2
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 1.5e-08 62.4 49 61.2
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 2.5e-08 61.6 40 62.5
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 5.7e-08 60.5 49 63.3
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 5.7e-08 60.5 40 62.5
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 7.4e-08 60.1 40 60.0
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 7.4e-08 60.1 48 56.2
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 9.7e-08 59.7 40 60.0
A08p10380 Brassica napus HOM05D004130 ORTHO05D004705 1.3e-07 59.3 41 68.3
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 1.6e-07 58.9 40 65.0
A09p34530 Brassica napus HOM05D004130 ORTHO05D004705 2.8e-07 58.2 43 67.4
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 3.7e-07 57.8 40 57.5
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 1.4e-06 55.8 40 62.5
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 1.4e-06 55.8 40 57.5
C05p40370 Brassica napus HOM05D004130 ORTHO05D004705 1.4e-06 55.8 41 63.4
BolC5t32777H Brassica oleracea HOM05D004130 ORTHO05D004705 1.4e-06 55.8 41 63.4
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 1.8e-06 55.5 43 62.8


User provided reference genes

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