Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 2.1e-99 365.9 215 100.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.5e-73 280.0 213 81.2
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.2e-59 233.8 211 72.5
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.8e-49 198.4 213 62.4
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 5.8e-49 198.4 208 63.5
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-48 196.4 213 62.4
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 8.3e-48 194.5 216 59.7
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.2e-47 192.6 213 62.0
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 5.4e-47 191.8 213 62.0
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.4e-47 191.8 213 62.0
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.4e-47 191.8 213 60.6
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.0e-37 161.0 203 55.7
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.6e-37 158.3 214 51.4
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.5e-36 156.4 214 52.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 8.1e-35 151.4 212 51.4
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.0e-33 146.7 197 54.3
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.2e-31 137.9 180 53.3
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 6.0e-30 135.2 104 78.8
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.3e-29 133.3 213 49.3
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 3.0e-29 132.9 215 48.8
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 5.1e-29 132.1 215 47.0
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.5e-28 129.8 204 49.5
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 3.3e-28 129.4 223 43.0
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 4.3e-28 129.0 218 44.5
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.6e-27 127.1 193 49.7
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.8e-27 126.3 185 43.8
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.7e-27 125.6 190 49.5
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.8e-26 123.6 191 50.3
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.1e-26 122.9 278 34.2
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 5.2e-26 122.1 203 48.3
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 5.2e-26 122.1 192 50.0
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 8.9e-26 121.3 199 47.7
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.0e-25 120.2 219 47.0
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 4.4e-25 119.0 199 45.2
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 4.4e-25 119.0 217 45.6
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 9.9e-25 117.9 267 40.8
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.3e-24 117.5 185 45.4
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 8.4e-24 114.8 214 39.7
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.4e-23 114.0 189 47.1
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 4.6e-22 109.0 206 39.8
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 7.8e-22 108.2 217 35.5
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 1.7e-21 107.1 187 49.7
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 3.3e-20 102.8 222 36.9
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-19 100.9 184 39.1
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.3e-19 100.9 197 43.7
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.6e-19 100.5 208 37.0
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 8.1e-19 98.2 159 39.6
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.4e-18 97.4 206 42.7
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-18 97.4 205 42.4
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.8e-18 97.1 169 36.1
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.5e-17 94.0 192 39.1
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 9.9e-17 91.3 181 37.6
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.9e-15 87.0 88 68.2
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 4.2e-15 85.9 86 67.4
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 9.3e-15 84.7 168 38.7
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.2e-14 84.3 166 36.1
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.2e-14 84.3 186 32.8
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.6e-14 84.0 280 29.3
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 2.1e-14 83.6 183 36.1
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.7e-14 83.2 100 60.0
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 3.5e-14 82.8 147 37.4
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 4.6e-14 82.4 166 38.6
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 4.6e-14 82.4 88 67.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 7.9e-14 81.6 88 65.9
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.0e-13 81.3 180 34.4
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.3e-13 80.9 88 64.8
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.3e-13 80.9 88 67.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.3e-13 80.9 89 66.3
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.8e-13 80.5 89 66.3
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.3e-13 80.1 80 70.0
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 3.9e-13 79.3 202 33.2
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.1e-13 79.0 88 65.9
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 8.7e-13 78.2 88 64.8
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.5e-12 77.4 88 65.9
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 2.5e-12 76.6 194 34.5
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 3.3e-12 76.3 88 68.2
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 4.3e-12 75.9 88 61.4
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 4.3e-12 75.9 114 57.0
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 5.6e-12 75.5 148 37.8
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 5.6e-12 75.5 124 42.7
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.6e-12 75.5 118 41.5
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 7.4e-12 75.1 81 67.9
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 9.6e-12 74.7 194 34.0
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.6e-11 73.9 86 60.5
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.6e-11 73.9 88 62.5
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.6e-11 73.9 79 50.6
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.6e-11 73.9 192 33.9
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.1e-11 73.6 133 39.1
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.1e-11 73.6 177 33.9
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.1e-11 73.6 90 61.1
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 2.1e-11 73.6 304 31.2
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.8e-11 73.2 88 65.9
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 3.6e-11 72.8 88 64.8
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 4.8e-11 72.4 87 60.9
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 6.2e-11 72.0 80 46.2
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 6.2e-11 72.0 133 42.9
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 6.2e-11 72.0 133 42.9
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 6.2e-11 72.0 160 34.4
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 8.1e-11 71.6 87 60.9
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 8.1e-11 71.6 98 60.2
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-10 70.9 132 40.9
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-10 70.9 75 68.0
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.8e-10 70.5 178 36.0
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.8e-10 70.5 78 66.7
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 2.4e-10 70.1 147 38.1
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 2.4e-10 70.1 147 38.1
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.4e-10 70.1 85 62.4
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-10 70.1 88 63.6
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.4e-10 70.1 86 60.5
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.1e-10 69.7 76 51.3
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 3.1e-10 69.7 41 80.5
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 3.1e-10 69.7 178 37.1
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 4.0e-10 69.3 176 40.3
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 4.0e-10 69.3 184 33.2
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 4.0e-10 69.3 91 60.4
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 4.0e-10 69.3 78 48.7
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 5.3e-10 68.9 91 58.2
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 5.3e-10 68.9 77 68.8
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.3e-10 68.9 93 61.3
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 5.3e-10 68.9 75 64.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 6.9e-10 68.6 90 61.1
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 6.9e-10 68.6 88 59.1
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 9.0e-10 68.2 91 58.2
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.0e-10 68.2 41 78.0
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.2e-09 67.8 78 62.8
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.5e-09 67.4 88 60.2
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 2.0e-09 67.0 87 57.5
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 2.6e-09 66.6 134 38.8
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.5e-09 65.9 104 51.9
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 4.5e-09 65.9 103 44.7
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 4.5e-09 65.9 88 59.1
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.6e-09 65.1 57 59.6
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 7.6e-09 65.1 79 64.6
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 7.6e-09 65.1 96 57.3
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 9.9e-09 64.7 76 61.8
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.3e-08 64.3 50 66.0
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 1.7e-08 63.9 125 38.4
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.7e-08 63.9 76 48.7
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.2e-08 63.5 155 38.1
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-08 63.5 76 48.7
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.2e-08 63.5 92 55.4
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 3.8e-08 62.8 58 58.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 3.8e-08 62.8 74 47.3
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 3.8e-08 62.8 88 61.4
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.9e-08 62.4 60 56.7
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 4.9e-08 62.4 76 48.7
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.9e-08 62.4 76 48.7
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 4.9e-08 62.4 66 54.5
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 4.9e-08 62.4 85 55.3
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.9e-08 62.4 79 63.3
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 6.4e-08 62.0 92 55.4
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 8.4e-08 61.6 75 61.3
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-07 61.2 76 47.4
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.1e-07 61.2 90 44.4
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 1.4e-07 60.8 105 42.9
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.4e-07 60.8 89 57.3
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.9e-07 60.5 111 36.9
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-07 60.1 53 54.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 3.2e-07 59.7 76 42.1
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 4.2e-07 59.3 84 59.5
Lsat_1_v5_gn_5_142981 Lactuca sativa HOM05D003238 ORTHO05D003571 4.2e-07 59.3 54 55.6
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 5.5e-07 58.9 87 57.5
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 5.5e-07 58.9 77 58.4
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 5.5e-07 58.9 204 34.8
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 5.5e-07 58.9 61 52.5
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.1e-07 58.5 112 38.4
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 9.3e-07 58.2 101 52.5
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 1.2e-06 57.8 133 32.3
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.2e-06 57.8 74 47.3
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.6e-06 57.4 91 41.8
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.6e-06 57.4 47 55.3
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.1e-06 57.0 98 36.7
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.7e-06 56.6 72 65.3
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 2.7e-06 56.6 47 53.2
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 3.5e-06 56.2 87 52.9
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 3.5e-06 56.2 88 37.5
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 6.0e-06 55.5 78 59.0
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 6.0e-06 55.5 79 48.1
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 6.0e-06 55.5 79 48.1
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.9e-06 55.1 73 39.7


User provided reference genes

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