Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1080400 Malus domestica HOM05D002237 ORTHO05D002213 8.1e-200 700.3 374 100.0
MD15G1207800 Malus domestica HOM05D002237 ORTHO05D002213 3.3e-108 396.0 289 74.4
Prupe.7G209100 Prunus persica HOM05D002237 ORTHO05D002213 7.0e-34 149.1 302 38.7
BolC9t57710H Brassica oleracea HOM05D002237 ORTHO05D002213 1.1e-31 141.7 307 39.1
CiPaw.03G215600 Carya illinoinensis HOM05D002237 ORTHO05D002213 6.3e-27 125.9 299 36.1
CANSAT56G0176 Cannabis sativa HOM05D002237 ORTHO05D002213 3.1e-26 123.6 349 35.8
CANSAT56G0014 Cannabis sativa HOM05D002237 ORTHO05D002213 7.0e-26 122.5 348 36.2
BcaB05g22304 Brassica carinata HOM05D002237 ORTHO05D002213 1.6e-25 121.3 379 32.7
A02p08820 Brassica napus HOM05D002237 ORTHO05D002213 7.7e-25 119.0 365 32.9
BraA02t05949Z Brassica rapa HOM05D002237 ORTHO05D002213 1.3e-24 118.2 377 32.6
Atru.chr7.1599 Acer truncatum HOM05D002237 ORTHO05D002213 1.5e-23 114.8 187 42.2
A10p14300 Brassica napus HOM05D002237 ORTHO05D002213 3.2e-23 113.6 367 32.4
BraA10t43521Z Brassica rapa HOM05D002237 ORTHO05D002213 3.2e-23 113.6 367 32.4
CiPaw.03G215700 Carya illinoinensis HOM05D002237 ORTHO05D002213 5.5e-23 112.8 294 34.7
Manes.16G101500 Manihot esculenta HOM05D002237 ORTHO05D002213 6.1e-22 109.4 303 33.0
Carub.0008s1746 Capsella rubella HOM05D002237 ORTHO05D002213 8.0e-22 109.0 382 33.0
BcaB08g36030 Brassica carinata HOM05D002237 ORTHO05D002213 1.4e-21 108.2 377 32.9
BcaC04g20033 Brassica carinata HOM05D002237 ORTHO05D002213 1.4e-21 108.2 370 32.2
CARHR270720 Cardamine hirsuta HOM05D002237 ORTHO05D002213 1.8e-21 107.8 379 30.1
AL52U10060 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 2.3e-21 107.5 376 32.2
AT5G56980 Arabidopsis thaliana HOM05D002237 ORTHO05D002213 3.0e-21 107.1 380 31.8
AL8G32850 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 5.2e-21 106.3 374 32.6
QL02p062593 Quercus lobata HOM05D002237 ORTHO05D002213 2.0e-20 104.4 340 31.2
BcaC03g14188 Brassica carinata HOM05D002237 ORTHO05D002213 5.7e-20 102.8 371 31.5
C02p14710 Brassica napus HOM05D002237 ORTHO05D002213 5.7e-20 102.8 371 31.5
BolC2t07596H Brassica oleracea HOM05D002237 ORTHO05D002213 5.7e-20 102.8 371 31.5
Thhalv10013847m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 9.8e-20 102.1 380 31.3
Eucgr.C00886 Eucalyptus grandis HOM05D002237 ORTHO05D002213 1.3e-19 101.7 366 31.7
Aa31LG3G12870 Aethionema arabicum HOM05D002237 ORTHO05D002213 2.2e-19 100.9 364 31.9
CiPaw.03G215500 Carya illinoinensis HOM05D002237 ORTHO05D002213 3.7e-19 100.1 301 33.2
PGR142G4283 Punica granatum HOM05D002237 ORTHO05D002213 3.7e-19 100.1 360 31.9
Sp6g18690 Schrenkiella parvula HOM05D002237 ORTHO05D002213 4.8e-19 99.8 371 29.6
Ciclev10008860m.g Citrus clementina HOM05D002237 ORTHO05D002213 6.3e-19 99.4 323 31.6
THA.LOC104817760 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 8.3e-19 99.0 330 33.9
Manes.03G034300 Manihot esculenta HOM05D002237 ORTHO05D002213 3.1e-18 97.1 303 31.4
CARHR233650 Cardamine hirsuta HOM05D002237 ORTHO05D002213 5.4e-18 96.3 306 30.7
Ciclev10009087m.g Citrus clementina HOM05D002237 ORTHO05D002213 9.1e-18 95.5 308 33.1
Thhalv10025915m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 2.7e-17 94.0 302 32.1
Sabra18G0048700 Salix brachista HOM05D002237 ORTHO05D002213 2.7e-17 94.0 313 31.3
Eucgr.D00713 Eucalyptus grandis HOM05D002237 ORTHO05D002213 3.5e-17 93.6 221 36.7
MD15G1059100 Malus domestica HOM05D002237 ORTHO05D002213 1.0e-16 92.0 315 31.7
Manes.16G080900 Manihot esculenta HOM05D002237 ORTHO05D002213 1.7e-16 91.3 314 31.8
TWI63G0889 Tripterygium wilfordii HOM05D002237 ORTHO05D002213 2.3e-16 90.9 294 30.3
Potri.006G228800 Populus trichocarpa HOM05D002237 ORTHO05D002213 5.0e-16 89.7 309 31.4
PGR031G2556 Punica granatum HOM05D002237 ORTHO05D002213 6.6e-16 89.4 348 33.0
MBI04_g31173_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 8.6e-16 89.0 311 28.3
CARHR114840 Cardamine hirsuta HOM05D002237 ORTHO05D002213 1.1e-15 88.6 333 30.3
MBI04_g31169_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 1.1e-15 88.6 313 29.1
QL02p001128 Quercus lobata HOM05D002237 ORTHO05D002213 1.9e-15 87.8 310 32.9
Prupe.1G411600 Prunus persica HOM05D002237 ORTHO05D002213 2.5e-15 87.4 310 30.6
Sabra06G0177200 Salix brachista HOM05D002237 ORTHO05D002213 4.2e-15 86.7 309 31.1
Eucgr.C00651 Eucalyptus grandis HOM05D002237 ORTHO05D002213 9.5e-15 85.5 356 30.9
Thecc.09G054200 Theobroma cacao HOM05D002237 ORTHO05D002213 1.2e-14 85.1 327 30.6
TWI63G0843 Tripterygium wilfordii HOM05D002237 ORTHO05D002213 1.2e-14 85.1 308 29.2
Dinv36772 Davidia involucrata HOM05D002237 ORTHO05D002213 2.1e-14 84.3 311 29.3
Duzib150G0266 Durio zibethinus HOM05D002237 ORTHO05D002213 3.6e-14 83.6 295 32.2
THA.LOC104803728 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 3.6e-14 83.6 331 32.3
Duzib168G2392 Durio zibethinus HOM05D002237 ORTHO05D002213 4.7e-14 83.2 297 33.0
AT2G26110 Arabidopsis thaliana HOM05D002237 ORTHO05D002213 6.1e-14 82.8 312 29.8
Gohir.A06G087500 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.0e-13 82.0 320 29.1
PSO210G0663 Papaver somniferum HOM05D002237 ORTHO05D002213 1.8e-13 81.3 302 29.5
Sp7g24150 Schrenkiella parvula HOM05D002237 ORTHO05D002213 1.8e-13 81.3 306 29.4
Thecc.09G088400 Theobroma cacao HOM05D002237 ORTHO05D002213 1.8e-13 81.3 289 33.2
COL.COLO4_18195 Corchorus olitorius HOM05D002237 ORTHO05D002213 3.0e-13 80.5 298 32.2
Cpa.g.sc7.182 Carica papaya HOM05D002237 ORTHO05D002213 4.0e-13 80.1 311 30.9
Cfa003084 Carpinus fangiana HOM05D002237 ORTHO05D002213 4.0e-13 80.1 292 29.8
Sp4g05990 Schrenkiella parvula HOM05D002237 ORTHO05D002213 4.0e-13 80.1 309 29.4
Actinidia39713 Actinidia chinensis HOM05D002237 ORTHO05D002213 6.8e-13 79.3 307 30.9
Thhalv10002336m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 6.8e-13 79.3 310 30.3
Duzib150G1021 Durio zibethinus HOM05D002237 ORTHO05D002213 8.9e-13 79.0 322 29.2
PSO063G0636 Papaver somniferum HOM05D002237 ORTHO05D002213 8.9e-13 79.0 413 26.4
Potri.018G053000 Populus trichocarpa HOM05D002237 ORTHO05D002213 8.9e-13 79.0 320 27.2
PSO210G3168 Papaver somniferum HOM05D002237 ORTHO05D002213 1.2e-12 78.6 302 29.5
Aa31LG5G9660 Aethionema arabicum HOM05D002237 ORTHO05D002213 1.5e-12 78.2 315 29.2
CiPaw.04G149200 Carya illinoinensis HOM05D002237 ORTHO05D002213 1.5e-12 78.2 200 37.5
Gohir.A07G011600 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.5e-12 78.2 297 29.3
MSTRG.14057 Avicennia marina HOM05D002237 ORTHO05D002213 2.0e-12 77.8 304 31.6
Sopen08g018730 Solanum pennellii HOM05D002237 ORTHO05D002213 2.0e-12 77.8 343 28.9
Aqoxy7G01205 Aquilegia oxysepala HOM05D002237 ORTHO05D002213 2.6e-12 77.4 298 30.5
Haze_25915 Corylus avellana HOM05D002237 ORTHO05D002213 2.6e-12 77.4 292 29.5
Actinidia25249 Actinidia chinensis HOM05D002237 ORTHO05D002213 3.4e-12 77.0 299 31.4
AL4G18280 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 4.4e-12 76.6 305 29.8
BcaNung05239 Brassica carinata HOM05D002237 ORTHO05D002213 4.4e-12 76.6 308 30.8
Gorai.010G100300 Gossypium raimondii HOM05D002237 ORTHO05D002213 4.4e-12 76.6 305 29.8
BraA01t01695Z Brassica rapa HOM05D002237 ORTHO05D002213 5.7e-12 76.3 292 30.1
Gohir.D06G086900 Gossypium hirsutum HOM05D002237 ORTHO05D002213 5.7e-12 76.3 305 29.8
THA.LOC104811745 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 5.7e-12 76.3 322 28.0
vmacro17244 Vaccinium macrocarpon HOM05D002237 ORTHO05D002213 5.7e-12 76.3 95 49.5
Carub.0004s0595 Capsella rubella HOM05D002237 ORTHO05D002213 9.8e-12 75.5 302 30.1
Lsat_1_v5_gn_6_13421 Lactuca sativa HOM05D002237 ORTHO05D002213 9.8e-12 75.5 332 29.8
Actinidia39714 Actinidia chinensis HOM05D002237 ORTHO05D002213 1.3e-11 75.1 311 30.9
A01p17410 Brassica napus HOM05D002237 ORTHO05D002213 1.3e-11 75.1 292 30.1
Gorai.001G022700 Gossypium raimondii HOM05D002237 ORTHO05D002213 1.3e-11 75.1 328 29.0
PSO210G1183 Papaver somniferum HOM05D002237 ORTHO05D002213 1.7e-11 74.7 307 29.0
Solyc08g065150.1 Solanum lycopersicum HOM05D002237 ORTHO05D002213 1.7e-11 74.7 339 28.6
Hma1.2p1_0798F.1_g219880 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 2.8e-11 73.9 101 44.6
RcHm_v2.0_Chr6g0310991 Rosa chinensis HOM05D002237 ORTHO05D002213 2.8e-11 73.9 298 29.5
TWI34G0810 Tripterygium wilfordii HOM05D002237 ORTHO05D002213 2.8e-11 73.9 305 27.9
C01p21920 Brassica napus HOM05D002237 ORTHO05D002213 4.9e-11 73.2 308 30.5
BolC1t02119H Brassica oleracea HOM05D002237 ORTHO05D002213 4.9e-11 73.2 308 30.5
Gohir.A07G022100 Gossypium hirsutum HOM05D002237 ORTHO05D002213 4.9e-11 73.2 340 29.1
Gohir.D07G022000 Gossypium hirsutum HOM05D002237 ORTHO05D002213 4.9e-11 73.2 323 29.4
MSTRG.1684 Avicennia marina HOM05D002237 ORTHO05D002213 6.3e-11 72.8 300 28.7
AL7G26850 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 8.3e-11 72.4 293 25.9
BcaC09g50665 Brassica carinata HOM05D002237 ORTHO05D002213 8.3e-11 72.4 308 30.2
Gohir.D07G011400 Gossypium hirsutum HOM05D002237 ORTHO05D002213 8.3e-11 72.4 296 27.7
Gorai.001G012100 Gossypium raimondii HOM05D002237 ORTHO05D002213 8.3e-11 72.4 296 27.7
Sabra06G0120500 Salix brachista HOM05D002237 ORTHO05D002213 8.3e-11 72.4 316 28.2
Cfa017959 Carpinus fangiana HOM05D002237 ORTHO05D002213 1.1e-10 72.0 310 30.0
DCAR_000797 Daucus carota HOM05D002237 ORTHO05D002213 1.1e-10 72.0 294 30.6
THA.LOC104803792 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 1.1e-10 72.0 315 29.5
Glyma.15G170100 Glycine max HOM05D002237 ORTHO05D002213 1.4e-10 71.6 299 27.4
AT4G26130 Arabidopsis thaliana HOM05D002237 ORTHO05D002213 1.8e-10 71.2 303 25.7
Eucgr.C00891 Eucalyptus grandis HOM05D002237 ORTHO05D002213 1.8e-10 71.2 315 27.9
FAN28G1161 Fragaria x ananassa HOM05D002237 ORTHO05D002213 1.8e-10 71.2 296 30.7
VMungo0647G2239 Vigna mungo HOM05D002237 ORTHO05D002213 3.2e-10 70.5 303 31.4
CSS0010318 Camellia sinensis var. sinensis HOM05D002237 ORTHO05D002213 4.1e-10 70.1 302 28.8
Cpa.g.sc61.39 Carica papaya HOM05D002237 ORTHO05D002213 4.1e-10 70.1 333 27.0
Nn8g38853 Nelumbo nucifera HOM05D002237 ORTHO05D002213 4.1e-10 70.1 312 28.5
ClCG03G015520 Citrullus lanatus HOM05D002237 ORTHO05D002213 5.4e-10 69.7 314 26.8
Oeu041234.1 Olea europaea HOM05D002237 ORTHO05D002213 7.0e-10 69.3 146 39.7
PGSC0003DMG400035559 Solanum tuberosum HOM05D002237 ORTHO05D002213 1.2e-09 68.6 358 29.6
MSTRG.19510 Avicennia marina HOM05D002237 ORTHO05D002213 1.6e-09 68.2 136 38.2
CAN.G352.21 Capsicum annuum HOM05D002237 ORTHO05D002213 2.0e-09 67.8 335 27.8
Cc03_g09990 Coffea canephora HOM05D002237 ORTHO05D002213 2.0e-09 67.8 89 46.1
FAN23G1561 Fragaria x ananassa HOM05D002237 ORTHO05D002213 2.7e-09 67.4 198 33.3
FAN27G2230 Fragaria x ananassa HOM05D002237 ORTHO05D002213 4.5e-09 66.6 296 26.4
Glyma.13G104500 Glycine max HOM05D002237 ORTHO05D002213 4.5e-09 66.6 312 31.1
ECA236G2512 Erigeron canadensis HOM05D002237 ORTHO05D002213 5.9e-09 66.2 315 29.2
Phvul.009G232000 Phaseolus vulgaris HOM05D002237 ORTHO05D002213 5.9e-09 66.2 322 28.0
CiPaw.16G028400 Carya illinoinensis HOM05D002237 ORTHO05D002213 7.8e-09 65.9 151 34.4
Gohir.D13G199100 Gossypium hirsutum HOM05D002237 ORTHO05D002213 7.8e-09 65.9 290 29.0
Psat4g015240 Pisum sativum HOM05D002237 ORTHO05D002213 7.8e-09 65.9 97 41.2
Actinidia26073 Actinidia chinensis HOM05D002237 ORTHO05D002213 1.0e-08 65.5 310 28.7
HanXRQChr03g0060491 Helianthus annuus HOM05D002237 ORTHO05D002213 1.0e-08 65.5 319 26.6
Carub.0007s1482 Capsella rubella HOM05D002237 ORTHO05D002213 1.3e-08 65.1 302 25.5
Gohir.A13G193300 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.3e-08 65.1 288 27.8
Medtr4g126210 Medicago truncatula HOM05D002237 ORTHO05D002213 1.3e-08 65.1 303 28.4
Dinv22895 Davidia involucrata HOM05D002237 ORTHO05D002213 1.7e-08 64.7 308 28.2
TPR.G9473 Trifolium pratense HOM05D002237 ORTHO05D002213 2.3e-08 64.3 98 42.9
VMungo1309G0962 Vigna mungo HOM05D002237 ORTHO05D002213 2.3e-08 64.3 307 26.7
MSTRG.25948 Avicennia marina HOM05D002237 ORTHO05D002213 2.9e-08 63.9 307 27.7
Hma1.2p1_0482F.1_g162400 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 2.9e-08 63.9 302 28.5
ClCG05G017870 Citrullus lanatus HOM05D002237 ORTHO05D002213 3.9e-08 63.5 145 33.1
Aa31LG3G510 Aethionema arabicum HOM05D002237 ORTHO05D002213 5.0e-08 63.2 347 28.0
Dinv27989 Davidia involucrata HOM05D002237 ORTHO05D002213 5.0e-08 63.2 306 27.1
MD08G1062500 Malus domestica HOM05D002237 ORTHO05D002213 5.0e-08 63.2 251 30.3
Psat6g020080 Pisum sativum HOM05D002237 ORTHO05D002213 5.0e-08 63.2 140 34.3
TAR383G0406 Trochodendron aralioides HOM05D002237 ORTHO05D002213 5.0e-08 63.2 292 27.1
Nitab4.5_0003648g0010 Nicotiana tabacum HOM05D002237 ORTHO05D002213 6.6e-08 62.8 288 31.2
CSS0012916 Camellia sinensis var. sinensis HOM05D002237 ORTHO05D002213 8.6e-08 62.4 310 28.4
Glyma.09G063300 Glycine max HOM05D002237 ORTHO05D002213 8.6e-08 62.4 310 27.1
HanXRQChr06g0178571 Helianthus annuus HOM05D002237 ORTHO05D002213 1.1e-07 62.0 324 27.8
FAN19G3195 Fragaria x ananassa HOM05D002237 ORTHO05D002213 1.5e-07 61.6 296 28.4
PSO832G3506 Papaver somniferum HOM05D002237 ORTHO05D002213 1.5e-07 61.6 417 24.9
FAN15G1416 Fragaria x ananassa HOM05D002237 ORTHO05D002213 1.9e-07 61.2 295 27.5
FAN26G2487 Fragaria x ananassa HOM05D002237 ORTHO05D002213 1.9e-07 61.2 296 28.4
Gorai.013G227600 Gossypium raimondii HOM05D002237 ORTHO05D002213 1.9e-07 61.2 289 28.4
Migut.A00134 Erythranthe guttata HOM05D002237 ORTHO05D002213 2.5e-07 60.8 311 27.7
Nitab4.5_0000095g0170 Nicotiana tabacum HOM05D002237 ORTHO05D002213 2.5e-07 60.8 291 29.6
BraA09t40233Z Brassica rapa HOM05D002237 ORTHO05D002213 3.3e-07 60.5 306 27.1
FvH4_1g07560 Fragaria vesca HOM05D002237 ORTHO05D002213 4.3e-07 60.1 296 28.0
FAN26G0211 Fragaria x ananassa HOM05D002237 ORTHO05D002213 4.3e-07 60.1 296 27.7
Potri.006G152200 Populus trichocarpa HOM05D002237 ORTHO05D002213 4.3e-07 60.1 309 28.5
MELO3C016871.2 Cucumis melo HOM05D002237 ORTHO05D002213 5.6e-07 59.7 137 32.8
Gorai.013G227500 Gossypium raimondii HOM05D002237 ORTHO05D002213 7.3e-07 59.3 293 29.4
MBI04_g31165_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 7.3e-07 59.3 304 26.6
FAN24G2308 Fragaria x ananassa HOM05D002237 ORTHO05D002213 9.5e-07 58.9 307 27.0
TPR.G13085 Trifolium pratense HOM05D002237 ORTHO05D002213 9.5e-07 58.9 323 28.5
MSTRG.6063 Avicennia marina HOM05D002237 ORTHO05D002213 1.2e-06 58.5 296 26.0
FAN20G2042 Fragaria x ananassa HOM05D002237 ORTHO05D002213 1.2e-06 58.5 296 25.7
MBI04_g31172_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 1.2e-06 58.5 300 24.3
HanXRQChr03g0079531 Helianthus annuus HOM05D002237 ORTHO05D002213 2.1e-06 57.8 339 26.3
VMungo1215G3160 Vigna mungo HOM05D002237 ORTHO05D002213 2.1e-06 57.8 304 27.3
Cc08_g10640 Coffea canephora HOM05D002237 ORTHO05D002213 2.8e-06 57.4 361 26.3
CsaV3_1G040530 Cucumis sativus L. HOM05D002237 ORTHO05D002213 2.8e-06 57.4 297 23.6
FvH4_2g31830 Fragaria vesca HOM05D002237 ORTHO05D002213 2.8e-06 57.4 307 26.7
Rhsim05G0020400 Rhododendron simsii HOM05D002237 ORTHO05D002213 2.8e-06 57.4 304 28.9
A09p47750 Brassica napus HOM05D002237 ORTHO05D002213 3.6e-06 57.0 305 26.6
DCAR_030907 Daucus carota HOM05D002237 ORTHO05D002213 3.6e-06 57.0 86 45.3
Phvul.001G036100 Phaseolus vulgaris HOM05D002237 ORTHO05D002213 3.6e-06 57.0 297 28.6
SalBow4G0805 Salvia bowleyana HOM05D002237 ORTHO05D002213 3.6e-06 57.0 317 29.0
CANSAT25G0876 Cannabis sativa HOM05D002237 ORTHO05D002213 4.7e-06 56.6 307 27.4
Cc11_g08620 Coffea canephora HOM05D002237 ORTHO05D002213 4.7e-06 56.6 106 38.7
BcaB01g00157 Brassica carinata HOM05D002237 ORTHO05D002213 6.1e-06 56.2 128 32.8
Ca_13160_v3 Cicer arietinum L. HOM05D002237 ORTHO05D002213 8.0e-06 55.8 309 28.2
Peaxi162Scf01461g00029 Petunia axillaris HOM05D002237 ORTHO05D002213 8.0e-06 55.8 298 29.9


User provided reference genes

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