Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 8.2e-150 533.9 306 100.0
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.6e-137 493.0 307 88.3
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 7.3e-122 441.0 306 82.7
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.6e-116 421.8 306 74.5
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.6e-116 421.8 306 74.5
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.0e-115 419.1 306 74.2
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 3.9e-115 418.7 306 71.9
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.6e-115 417.5 306 73.9
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.5e-114 416.0 306 73.5
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.4e-109 400.2 306 73.2
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 8.6e-107 391.0 308 76.0
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.2e-105 387.1 305 74.4
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 3.1e-104 382.5 306 73.2
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.2e-103 380.6 299 72.6
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.5e-103 380.2 303 72.6
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.5e-103 380.2 303 72.6
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 2.0e-103 379.8 304 69.1
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 7.5e-103 377.9 306 69.3
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 2.2e-102 376.3 304 72.0
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 2.9e-102 375.9 294 68.0
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 6.4e-102 374.8 306 69.0
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.9e-101 373.2 308 72.4
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.9e-101 373.2 306 66.3
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.2e-101 372.5 307 69.7
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 4.1e-101 372.1 306 72.5
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-100 370.5 306 66.7
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.6e-100 370.2 298 69.1
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 4.6e-100 368.6 297 73.7
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 6.6e-99 364.8 306 71.9
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 8.6e-99 364.4 304 72.0
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 8.6e-99 364.4 304 69.1
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 5.6e-98 361.7 306 65.7
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.2e-97 360.5 302 69.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.2e-97 360.5 294 70.1
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.6e-97 360.1 297 65.7
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 3.6e-97 359.0 300 66.3
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 4.0e-96 355.5 303 65.0
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 8.9e-96 354.4 299 65.9
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 1.5e-95 353.6 308 62.3
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 3.4e-95 352.4 290 69.7
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 9.9e-95 350.9 306 64.4
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.3e-94 350.5 306 61.4
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.2e-94 349.7 301 65.1
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 2.2e-94 349.7 306 69.0
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.9e-94 349.4 299 64.9
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 4.9e-94 348.6 299 63.2
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 8.4e-94 347.8 306 64.1
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.1e-93 347.4 299 64.9
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 9.2e-93 344.4 302 64.2
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.2e-92 344.0 306 61.4
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 1.6e-92 343.6 306 66.3
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 3.5e-92 342.4 297 64.6
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.7e-91 340.1 308 60.4
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 3.9e-91 339.0 289 64.4
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 3.9e-91 339.0 289 64.4
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 5.1e-91 338.6 306 63.4
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 8.7e-91 337.8 307 63.5
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.5e-90 337.0 300 61.0
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.9e-90 336.7 306 63.1
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.5e-90 336.3 299 63.5
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.2e-89 334.0 289 63.3
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 2.1e-89 333.2 299 67.2
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 4.7e-89 332.0 306 59.2
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.1e-88 330.9 308 61.0
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.8e-88 330.1 305 65.9
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 3.1e-88 329.3 296 67.6
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 4.0e-88 328.9 303 61.1
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 5.3e-88 328.6 302 59.6
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 6.9e-88 328.2 308 64.9
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 9.0e-88 327.8 308 62.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.5e-87 327.0 302 67.9
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 2.6e-87 326.2 314 62.7
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 4.4e-87 325.5 310 59.7
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 2.2e-86 323.2 295 63.7
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 2.9e-86 322.8 309 60.2
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 3.8e-86 322.4 309 58.9
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 3.8e-86 322.4 306 63.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 6.4e-86 321.6 313 57.2
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.1e-85 320.9 219 74.9
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.2e-85 318.9 309 59.2
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 4.2e-85 318.9 309 62.5
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.2e-84 317.4 310 64.8
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.6e-84 317.0 294 60.5
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 3.5e-84 315.8 301 59.5
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 2.3e-83 313.2 299 53.8
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 5.1e-83 312.0 313 58.8
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 5.1e-83 312.0 313 58.8
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 5.1e-83 312.0 263 73.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 8.7e-83 311.2 308 58.8
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 8.7e-83 311.2 310 55.5
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.1e-82 310.8 321 55.1
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.9e-82 310.1 312 63.8
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.3e-82 309.3 307 54.1
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 3.3e-82 309.3 310 62.3
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 2.1e-81 306.6 279 59.9
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 2.8e-81 306.2 314 58.3
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 3.6e-81 305.8 314 58.3
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 8.1e-81 304.7 295 61.4
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.1e-80 304.3 307 53.1
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 3.1e-80 302.8 242 68.6
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 3.1e-80 302.8 258 63.6
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 4.0e-80 302.4 311 58.5
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 4.0e-80 302.4 314 57.6
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 5.3e-80 302.0 350 56.3
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 6.9e-80 301.6 314 57.6
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 9.0e-80 301.2 309 62.8
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 9.0e-80 301.2 314 57.6
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 9.0e-80 301.2 294 55.1
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 6.4e-78 295.0 301 53.2
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 6.4e-78 295.0 273 58.2
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 9.3e-77 291.2 309 62.1
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.8e-75 287.0 295 56.6
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 2.5e-74 283.1 318 51.9
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 3.3e-74 282.7 229 75.1
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.3e-73 280.8 263 59.3
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 2.1e-73 280.0 283 56.5
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 7.6e-71 271.6 218 66.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 4.9e-70 268.9 320 47.8
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.1e-61 241.1 281 52.3
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 6.1e-60 235.3 186 66.7
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 2.4e-56 223.4 311 53.1
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 5.3e-56 222.2 219 55.3
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.2e-55 221.1 208 56.2
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.7e-54 217.2 313 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.3e-51 206.8 185 56.2
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 5.0e-46 189.1 223 43.5
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 2.7e-36 156.8 99 78.8
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 8.8e-35 151.8 246 38.2
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 5.7e-34 149.1 131 63.4
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.1e-32 143.3 202 42.6
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 7.7e-31 138.7 279 40.9
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 6.8e-27 125.6 215 37.2
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 4.8e-25 119.4 68 80.9
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.1e-24 115.2 68 75.0
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 1.6e-23 114.4 165 37.0
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.5e-23 112.8 134 59.0
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.5e-23 112.8 134 59.0
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 9.4e-21 105.1 187 35.3
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 2.1e-20 104.0 64 79.7
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.4e-19 101.3 80 67.5
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.8e-16 90.9 52 80.8
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.3e-14 84.7 119 46.2
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.6e-12 77.8 50 72.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.7e-12 76.3 46 67.4
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.4e-11 74.7 39 87.2
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.8e-11 74.3 50 66.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 8.3e-09 65.5 43 69.8
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 8.6e-06 55.5 77 58.4


User provided reference genes

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