Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 1.1e-311 1072.4 522 100.0
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 1.6e-294 1015.4 520 95.0
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 2.8e-283 978.0 516 89.7
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.9e-281 970.3 522 88.3
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.9e-280 968.0 522 88.1
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-278 962.6 522 87.7
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.1e-278 961.8 522 87.5
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 7.7e-273 943.3 520 86.0
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 7.4e-268 926.8 520 84.4
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 3.7e-267 924.5 520 84.0
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.4e-266 922.5 520 84.0
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.1e-266 921.4 520 84.4
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 3.1e-266 921.4 520 84.0
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.5e-263 911.8 514 84.8
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 5.5e-263 910.6 463 93.3
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 3.6e-262 907.9 520 82.7
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.4e-261 906.0 519 83.2
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.3e-261 905.2 519 82.9
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 3.0e-261 904.8 520 82.9
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 6.7e-261 903.7 544 80.3
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 6.7e-261 903.7 519 82.9
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.0e-260 902.1 518 83.2
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 1.4e-258 896.0 518 82.2
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 5.3e-258 894.0 520 81.2
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 2.0e-257 892.1 520 81.3
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 3.5e-257 891.3 516 82.4
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 5.9e-257 890.6 521 82.1
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 1.0e-256 889.8 521 82.1
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.3e-256 889.4 521 82.1
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.7e-256 889.0 544 78.7
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.2e-256 888.6 520 81.3
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 2.9e-256 888.3 512 82.6
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 3.8e-256 887.9 518 81.5
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 6.5e-256 887.1 521 81.2
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 8.5e-256 886.7 514 81.9
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 8.5e-256 886.7 521 81.8
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.5e-255 885.9 520 80.8
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.5e-255 885.2 521 82.1
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.5e-255 885.2 519 82.3
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.2e-255 884.8 518 80.3
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.2e-255 884.4 521 80.6
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 9.4e-255 883.2 521 80.4
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 2.7e-254 881.7 515 81.7
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 3.6e-254 881.3 520 80.0
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 6.1e-254 880.6 520 80.2
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 6.1e-254 880.6 521 80.2
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.0e-253 879.8 518 81.3
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 1.4e-253 879.4 518 81.1
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.8e-253 879.0 520 81.0
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.3e-253 878.6 524 80.5
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 1.5e-252 875.9 518 80.3
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.6e-252 875.2 520 79.8
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 4.4e-252 874.4 520 79.4
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 2.2e-251 872.1 513 81.7
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.8e-251 871.7 521 80.0
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 4.8e-251 870.9 521 79.5
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 4.8e-251 870.9 521 79.5
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.8e-250 869.0 518 79.9
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.8e-250 869.0 518 79.9
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 2.4e-250 868.6 521 79.1
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 5.4e-250 867.5 521 78.9
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 7.0e-250 867.1 521 78.9
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 9.1e-250 866.7 519 80.0
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 2.0e-249 865.5 521 78.9
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.7e-249 865.1 520 78.8
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 3.5e-249 864.8 520 79.8
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.5e-249 864.4 520 78.7
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.3e-248 862.8 520 78.8
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.8e-248 861.3 520 78.5
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 5.0e-248 860.9 520 79.0
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 5.0e-248 860.9 520 78.8
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 8.6e-248 860.1 520 79.4
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.1e-247 859.8 520 78.8
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-247 859.8 520 78.8
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.9e-247 859.0 521 78.9
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 3.3e-247 858.2 517 79.9
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 4.2e-247 857.8 520 78.7
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 5.5e-247 857.4 520 78.5
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 7.2e-247 857.1 518 79.2
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 2.1e-246 855.5 522 78.7
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 4.7e-246 854.4 521 78.7
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.0e-246 853.6 530 77.0
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 2.3e-245 852.0 492 82.3
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 5.2e-245 850.9 520 78.5
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 5.2e-245 850.9 520 78.5
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 6.8e-245 850.5 521 77.7
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.5e-244 849.4 554 74.9
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.4e-244 848.2 520 77.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 3.4e-244 848.2 520 78.3
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 4.4e-244 847.8 522 78.0
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 4.4e-244 847.8 520 78.1
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 9.8e-244 846.7 520 76.5
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 2.2e-243 845.5 464 86.4
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.4e-242 842.8 519 77.8
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 4.1e-242 841.3 522 77.6
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.2e-241 839.7 520 78.8
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 3.5e-241 838.2 516 77.9
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 4.5e-241 837.8 520 77.3
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 1.0e-240 836.6 526 75.5
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 1.7e-240 835.9 519 76.3
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 5.0e-240 834.3 517 77.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.5e-239 832.8 524 76.3
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 4.3e-239 831.2 520 76.9
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 4.4e-236 821.2 514 76.1
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 7.5e-236 820.5 530 74.7
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 2.9e-235 818.5 467 82.4
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 8.3e-235 817.0 477 80.1
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 8.3e-235 817.0 519 75.0
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 1.4e-234 816.2 519 75.1
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 2.4e-234 815.5 520 75.4
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 2.0e-233 812.4 466 83.3
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.0e-233 812.4 521 76.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 3.0e-232 808.5 521 73.9
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 8.6e-232 807.0 520 75.6
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.9e-231 805.8 519 74.4
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 9.5e-231 803.5 470 79.8
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 4.0e-229 798.1 553 71.2
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.2e-228 796.6 520 75.0
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 7.5e-228 793.9 490 77.8
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.7e-227 792.7 521 73.5
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.2e-227 792.3 520 73.3
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.4e-227 790.8 520 73.1
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 8.3e-227 790.4 469 80.8
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 1.4e-226 789.6 511 74.0
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 3.2e-226 788.5 513 73.5
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.2e-225 786.6 516 72.9
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.9e-224 781.6 495 74.3
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 8.6e-224 780.4 473 77.8
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 7.3e-223 777.3 495 73.9
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 9.5e-223 776.9 550 70.0
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 1.1e-221 773.5 561 69.7
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.2e-220 770.0 576 67.4
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 6.4e-219 764.2 519 71.3
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 3.0e-216 755.4 518 70.7
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.5e-215 753.1 523 70.7
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 9.5e-215 750.4 520 71.7
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.0e-208 730.3 520 69.0
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 6.6e-208 727.6 520 69.0
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 1.5e-207 726.5 540 66.7
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 2.8e-206 722.2 519 69.7
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.2e-204 716.8 377 89.1
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 3.0e-200 702.2 503 71.6
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 3.1e-189 665.6 383 83.0
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.9e-186 656.4 380 82.1
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.8e-184 649.8 561 61.1
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 3.9e-184 648.7 481 67.2
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 6.9e-181 637.9 476 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 9.0e-173 610.9 486 60.3
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.0e-171 607.4 446 63.0
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 3.4e-164 582.4 472 60.2
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.3e-155 553.9 449 59.7
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 5.2e-144 515.4 352 71.3
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 3.6e-137 492.7 293 79.9
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.7e-132 476.5 265 80.8
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 5.0e-131 472.2 289 78.9
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 5.2e-128 462.2 292 74.3
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.8e-126 456.4 291 75.3
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 7.0e-125 451.8 288 76.4
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 4.7e-105 386.0 250 73.2
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 7.5e-103 378.6 244 75.8
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.6e-82 309.3 207 72.5
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 3.3e-58 230.3 473 32.8
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 8.5e-54 215.7 131 74.0
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 4.3e-50 203.4 469 30.3
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.3e-41 172.9 203 48.3
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.2e-38 164.5 141 55.3
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 7.4e-34 149.4 109 66.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 3.0e-27 127.5 86 74.4
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 1.3e-22 112.1 60 90.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 7.2e-21 106.3 143 50.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 4.0e-19 100.5 58 75.9
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.4e-16 92.0 159 35.8
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 7.2e-13 79.7 165 38.2
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 1.2e-07 62.4 55 60.0


User provided reference genes

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