Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1058900 Malus domestica HOM05D003355 ORTHO05D247873 1.0e-41 172.9 83 100.0
MD02G1059000 Malus domestica HOM05D003355 ORTHO05D247816 2.1e-23 112.1 77 67.5
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 1.6e-07 59.3 61 50.8
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 1.6e-07 59.3 71 45.1
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 2.1e-07 58.9 61 49.2
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 2.1e-07 58.9 71 43.7
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 3.6e-07 58.2 61 50.8
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 4.7e-07 57.8 63 47.6
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 4.7e-07 57.8 70 44.3
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 4.7e-07 57.8 70 44.3
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 4.7e-07 57.8 58 50.0
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 4.7e-07 57.8 58 53.4
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 6.1e-07 57.4 61 49.2
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 6.1e-07 57.4 61 49.2
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 6.1e-07 57.4 58 48.3
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 6.1e-07 57.4 61 49.2
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.1e-07 57.4 58 51.7
AUR62032079 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.1e-07 57.4 58 51.7
AUR62034926 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.1e-07 57.4 58 51.7
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 6.1e-07 57.4 58 51.7
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 6.1e-07 57.4 61 49.2
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 6.1e-07 57.4 61 49.2
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 6.1e-07 57.4 61 49.2
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 6.1e-07 57.4 61 49.2
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 8.0e-07 57.0 54 53.7
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 8.0e-07 57.0 55 50.9
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 8.0e-07 57.0 61 49.2
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 8.0e-07 57.0 58 50.0
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 8.0e-07 57.0 61 49.2
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 8.0e-07 57.0 61 47.5
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 8.0e-07 57.0 61 49.2
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 8.0e-07 57.0 61 47.5
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 1.0e-06 56.6 61 49.2
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 1.0e-06 56.6 61 49.2
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 1.0e-06 56.6 61 49.2
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 1.0e-06 56.6 70 41.4
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.0e-06 56.6 70 41.4
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.0e-06 56.6 70 41.4
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.0e-06 56.6 70 41.4
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.0e-06 56.6 70 41.4
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 1.0e-06 56.6 70 41.4
Sc06g0001940 Simmondsia chinensis HOM05D003355 ORTHO05D006192 1.0e-06 56.6 61 45.9
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 1.0e-06 56.6 61 47.5
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 1.4e-06 56.2 61 49.2
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 1.4e-06 56.2 58 50.0
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 1.4e-06 56.2 58 50.0
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 1.4e-06 56.2 61 49.2
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 1.4e-06 56.2 61 49.2
QL02p103579 Quercus lobata HOM05D000004 ORTHO05D000002 1.4e-06 56.2 61 49.2
SEGI_21388 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 1.4e-06 56.2 54 53.7
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 1.4e-06 56.2 54 55.6
CDE07G0559 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 1.8e-06 55.8 58 48.3
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 1.8e-06 55.8 58 46.6
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 1.8e-06 55.8 58 46.6
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 1.8e-06 55.8 61 49.2
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 1.8e-06 55.8 54 50.0
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 1.8e-06 55.8 61 47.5
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 2.3e-06 55.5 58 48.3
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 2.3e-06 55.5 61 45.9
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 2.3e-06 55.5 61 47.5
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 2.3e-06 55.5 58 44.8
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 2.3e-06 55.5 58 44.8
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 2.3e-06 55.5 58 44.8
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 47.5
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 47.5
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 45.9
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 45.9
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 47.5
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 45.9
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 45.9
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 3.0e-06 55.1 61 45.9
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 4.0e-06 54.7 61 45.9
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 4.0e-06 54.7 61 45.9
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 4.0e-06 54.7 54 50.0
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 4.0e-06 54.7 58 46.6
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 4.0e-06 54.7 58 48.3
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 4.0e-06 54.7 58 46.6
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 4.0e-06 54.7 58 43.1
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 4.0e-06 54.7 58 43.1
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 4.0e-06 54.7 61 47.5
GSVIVG01012285001 Vitis vinifera HOM05D003355 ORTHO05D006192 4.0e-06 54.7 61 47.5
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 5.2e-06 54.3 61 45.9
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 6.8e-06 53.9 61 47.5
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 6.8e-06 53.9 61 45.9
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 6.8e-06 53.9 61 45.9
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 6.8e-06 53.9 58 48.3
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 8.8e-06 53.5 58 46.6
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 8.8e-06 53.5 54 50.0
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 8.8e-06 53.5 61 44.3
Sed0008456 Sechium edule HOM05D003355 ORTHO05D006192 8.8e-06 53.5 56 51.8


User provided reference genes

Program Settings