Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1052600 Malus domestica HOM05D000522 ORTHO05D247921 2.3e-108 395.6 199 100.0
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 1.1e-46 190.7 247 52.2
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 3.6e-45 185.7 247 51.4
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 1.0e-44 184.1 247 51.0
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 5.2e-44 181.8 247 48.2
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.0e-43 179.9 246 47.6
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.6e-43 179.5 245 47.8
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 1.3e-42 177.2 247 47.0
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.7e-42 176.8 245 46.9
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 6.3e-42 174.9 247 47.8
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.3e-41 171.8 246 46.7
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 2.3e-36 156.4 247 42.9
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 6.8e-36 154.8 247 42.1
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 1.5e-35 153.7 244 42.2
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 4.4e-35 152.1 247 40.9
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 4.4e-35 152.1 247 40.9
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 9.8e-35 151.0 247 42.9
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 9.8e-35 151.0 247 39.3
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 2.2e-34 149.8 247 40.9
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 2.2e-34 149.8 247 41.3
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 2.2e-34 149.8 247 42.1
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 2.8e-34 149.4 247 42.1
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 3.7e-34 149.1 247 40.5
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 3.7e-34 149.1 247 41.3
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 4.8e-34 148.7 247 42.9
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 4.8e-34 148.7 247 39.3
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 6.3e-34 148.3 247 40.9
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 6.3e-34 148.3 247 44.1
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 6.3e-34 148.3 247 42.9
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 8.3e-34 147.9 247 41.3
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 8.3e-34 147.9 247 41.3
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 8.3e-34 147.9 233 42.9
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 1.8e-33 146.7 247 38.9
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 2.4e-33 146.4 247 41.3
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 2.4e-33 146.4 247 39.7
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 2.4e-33 146.4 247 40.1
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 2.4e-33 146.4 247 40.1
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 3.1e-33 146.0 247 40.9
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 4.1e-33 145.6 247 40.1
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 7.0e-33 144.8 247 40.9
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 9.1e-33 144.4 247 40.1
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 9.1e-33 144.4 247 41.7
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 9.1e-33 144.4 246 41.5
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 1.6e-32 143.7 247 38.9
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 2.0e-32 143.3 247 38.9
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 3.5e-32 142.5 247 38.5
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 4.5e-32 142.1 247 40.1
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 5.9e-32 141.7 247 38.5
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 5.9e-32 141.7 247 38.5
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 5.9e-32 141.7 247 38.5
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 5.9e-32 141.7 247 39.7
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 5.9e-32 141.7 248 41.9
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 5.9e-32 141.7 247 42.1
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 7.7e-32 141.4 247 38.9
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 7.7e-32 141.4 247 41.3
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 7.7e-32 141.4 247 39.7
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 1.3e-31 140.6 245 38.4
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 1.3e-31 140.6 247 40.1
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 1.3e-31 140.6 247 40.1
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 1.7e-31 140.2 211 43.1
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 2.2e-31 139.8 247 40.1
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 2.2e-31 139.8 247 38.5
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 2.2e-31 139.8 243 39.9
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 2.2e-31 139.8 247 38.9
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 2.2e-31 139.8 247 41.3
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.2e-31 139.8 246 39.4
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 2.9e-31 139.4 247 39.7
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 3.8e-31 139.0 242 40.5
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 5.0e-31 138.7 247 40.1
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 5.0e-31 138.7 247 40.1
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 5.0e-31 138.7 247 38.5
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 6.5e-31 138.3 247 40.9
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 6.5e-31 138.3 247 41.3
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 6.5e-31 138.3 247 39.3
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 8.5e-31 137.9 247 41.7
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 8.5e-31 137.9 247 38.1
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 8.5e-31 137.9 247 40.1
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 8.5e-31 137.9 247 38.5
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 8.5e-31 137.9 248 40.7
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 8.5e-31 137.9 247 42.9
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.1e-30 137.5 247 40.5
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.1e-30 137.5 247 40.1
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 1.5e-30 137.1 239 41.0
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 1.5e-30 137.1 247 40.1
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 1.5e-30 137.1 247 38.5
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 1.5e-30 137.1 247 36.4
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 1.5e-30 137.1 247 38.5
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 1.9e-30 136.7 247 40.9
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 2.5e-30 136.3 247 40.9
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 3.2e-30 136.0 247 38.1
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 3.2e-30 136.0 247 39.7
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 4.2e-30 135.6 247 40.1
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 4.2e-30 135.6 247 38.5
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 4.2e-30 135.6 239 40.6
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 1.2e-29 134.0 247 40.1
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 2.1e-29 133.3 239 40.6
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 2.1e-29 133.3 239 40.6
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 3.6e-29 132.5 246 37.8
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 4.7e-29 132.1 246 39.0
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 6.1e-29 131.7 247 37.2
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 8.0e-29 131.3 247 38.1
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 8.0e-29 131.3 247 38.1
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 1.0e-28 131.0 247 36.4
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 1.4e-28 130.6 247 37.2
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.8e-28 130.2 247 38.9
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 1.8e-28 130.2 247 37.2
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 1.8e-28 130.2 247 38.5
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 2.3e-28 129.8 247 39.3
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 2.3e-28 129.8 247 38.1
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 3.0e-28 129.4 247 40.1
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 4.0e-28 129.0 246 37.0
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 5.2e-28 128.6 247 38.9
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 5.2e-28 128.6 271 36.5
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 8.8e-28 127.9 277 36.5
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.2e-27 127.5 242 36.4
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 1.2e-27 127.5 238 39.1
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 1.2e-27 127.5 247 36.4
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 1.5e-27 127.1 247 37.7
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.5e-27 127.1 241 37.3
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 1.5e-27 127.1 247 39.3
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 1.5e-27 127.1 247 38.1
Ah.09g227710 Amaranthus hybridus HOM05D000522 ORTHO05D004380 5.7e-27 125.2 247 37.7
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 5.7e-27 125.2 257 36.2
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 5.7e-27 125.2 247 35.6
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 9.8e-27 124.4 247 36.8
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 1.3e-26 124.0 247 34.8
QL02p086054 Quercus lobata HOM05D000522 ORTHO05D004380 2.2e-26 123.2 162 45.1
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 4.9e-26 122.1 238 35.7
PSO063G3875 Papaver somniferum HOM05D000522 ORTHO05D004380 8.3e-26 121.3 247 36.4
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 8.3e-26 121.3 236 36.0
PSO782G3947 Papaver somniferum HOM05D000522 ORTHO05D004380 1.1e-25 120.9 247 36.4
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 1.8e-25 120.2 245 34.7
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 2.4e-25 119.8 242 36.4
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 4.1e-25 119.0 242 37.2
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 2.0e-24 116.7 247 35.2
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 4.5e-24 115.5 262 34.4
Eucgr.C04134 Eucalyptus grandis HOM05D000522 ORTHO05D004380 7.8e-24 114.8 244 36.5
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 5.0e-23 112.1 244 36.1
vmacro06197 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 8.6e-23 111.3 197 40.6
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 1.5e-22 110.5 247 35.6
HanXRQChr10g0317641 Helianthus annuus HOM05D000522 ORTHO05D004380 2.5e-22 109.8 165 42.4
SMO147G0048 Selaginella moellendorffii HOM05D000522 ORTHO05D004380 2.5e-22 109.8 230 37.8
HanXRQChr13g0424731 Helianthus annuus HOM05D000522 ORTHO05D004380 6.1e-21 105.1 165 41.8
Oeu058085.3 Olea europaea HOM05D000522 ORTHO05D004380 2.3e-20 103.2 156 42.3
vmacro06198 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 6.8e-20 101.7 239 34.7
vmacro08116 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 8.9e-20 101.3 197 36.0
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 9.8e-19 97.8 135 43.0
RcHm_v2.0_Chr2g0092761 Rosa chinensis HOM05D000522 ORTHO05D004380 1.3e-18 97.4 134 43.3
RcHm_v2.0_Chr2g0092831 Rosa chinensis HOM05D000522 ORTHO05D004380 1.3e-18 97.4 134 43.3
FvH4_1g04450 Fragaria vesca HOM05D000522 ORTHO05D004380 2.9e-18 96.3 122 49.2
AUR62033410 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.4e-17 94.0 162 38.9
Pp3c14_25790 Physcomitrium patens HOM05D000522 ORTHO05D004380 1.4e-17 94.0 253 29.6
Sc08g0007180 Simmondsia chinensis HOM05D000522 ORTHO05D004380 1.8e-17 93.6 204 35.3
Pp3c2_2910 Physcomitrium patens HOM05D000522 ORTHO05D004380 2.4e-17 93.2 251 31.1
MD02G1053900 Malus domestica HOM05D000522 ORTHO05D004380 1.6e-16 90.5 143 46.9
Solyc05g018410.3 Solanum lycopersicum HOM05D000522 ORTHO05D004380 2.7e-16 89.7 204 34.3
Sopen05g015250 Solanum pennellii HOM05D000522 ORTHO05D004380 1.3e-15 87.4 204 34.3
Nn2g11819 Nelumbo nucifera HOM05D000522 ORTHO05D004380 8.6e-15 84.7 135 40.7
Mapoly0126s0026 Marchantia polymorpha HOM05D000522 ORTHO05D004380 1.5e-14 84.0 237 30.0
vmacro11394 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.5e-14 84.0 154 35.7
vmacro11392 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.5e-14 83.2 175 33.1
AagrBONN_evm.TU.Sc2ySwM_340.302 Anthoceros agrestis HOM05D000522 ORTHO05D004380 1.6e-13 80.5 232 29.3
SEGI_36085 Sequoiadendron giganteum HOM05D000522 ORTHO05D004380 6.8e-12 75.1 121 38.8
HanXRQChr10g0317691 Helianthus annuus HOM05D000522 ORTHO05D024576 7.5e-11 71.6 64 56.2
GSVIVG01004719001 Vitis vinifera HOM05D000522 ORTHO05D000565 3.0e-07 59.7 234 29.1
MD02G1055400 Malus domestica HOM05D000522 ORTHO05D004380 6.6e-07 58.5 31 90.3
Sopen05g015220 Solanum pennellii HOM05D000004 ORTHO05D000002 9.5e-06 54.7 97 37.1


User provided reference genes

Program Settings