Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1050500 Malus domestica HOM05D005850 ORTHO05D007405 4.7e-117 424.5 206 100.0
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 1.3e-114 416.4 204 98.5
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 6.9e-100 367.5 204 87.7
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 2.0e-99 365.9 204 86.3
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 5.4e-97 357.8 196 86.2
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.6e-96 356.3 196 86.2
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.1e-96 355.9 196 85.7
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 6.0e-96 354.4 196 85.7
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 7.9e-96 354.0 196 85.2
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 1.4e-92 343.2 201 82.6
MD00G1220200 Malus domestica HOM05D005850 ORTHO05D007405 2.0e-91 339.3 169 96.4
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 2.6e-91 339.0 204 79.4
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.4e-91 338.6 199 81.4
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 7.6e-91 337.4 204 78.4
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 7.6e-91 337.4 204 76.5
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 1.3e-90 336.7 204 76.5
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 1.3e-90 336.7 195 80.5
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.7e-90 336.3 184 85.9
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.2e-90 335.9 199 80.4
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.9e-90 335.5 199 80.9
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 8.4e-90 334.0 231 71.4
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 2.4e-89 332.4 204 76.5
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 9.3e-89 330.5 204 76.5
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 2.1e-88 329.3 201 77.1
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 1.0e-87 327.0 204 74.5
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 1.8e-87 326.2 202 77.7
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 2.3e-87 325.9 195 76.9
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 2.3e-87 325.9 204 74.5
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 3.9e-87 325.1 194 77.8
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 5.1e-87 324.7 195 76.9
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 6.7e-87 324.3 204 75.0
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 6.7e-87 324.3 198 78.8
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 1.5e-86 323.2 203 76.4
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 1.5e-86 323.2 203 76.4
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 1.5e-86 323.2 209 73.7
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 2.5e-86 322.4 204 75.0
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 3.3e-86 322.0 202 76.2
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 3.3e-86 322.0 204 73.5
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 3.3e-86 322.0 203 75.9
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 4.3e-86 321.6 210 75.7
arahy.Tifrunner.gnm1.ann1.2WTJ41 Arachis hypogaea HOM05D005850 ORTHO05D007405 1.3e-85 320.1 200 73.5
arahy.Tifrunner.gnm1.ann1.JQ4W8U Arachis hypogaea HOM05D005850 ORTHO05D007405 1.3e-85 320.1 200 73.5
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 1.3e-85 320.1 204 75.0
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 1.3e-85 320.1 201 76.1
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 4.8e-85 318.2 190 78.4
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 4.8e-85 318.2 204 74.5
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 8.2e-85 317.4 192 77.6
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 1.4e-84 316.6 195 74.9
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 1.4e-84 316.6 198 74.7
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 2.4e-84 315.8 204 74.0
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 2.4e-84 315.8 203 74.4
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 3.1e-84 315.5 200 74.5
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 3.1e-84 315.5 194 74.7
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 4.0e-84 315.1 204 72.1
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 6.9e-84 314.3 195 74.4
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 9.0e-84 313.9 204 73.5
vmacro20668 Vaccinium macrocarpon HOM05D005850 ORTHO05D007405 9.0e-84 313.9 179 82.7
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 4.5e-83 311.6 202 73.3
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 3.8e-82 308.5 204 71.6
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 3.8e-82 308.5 204 71.1
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 1.9e-81 306.2 204 71.6
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 2.5e-81 305.8 204 72.5
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 3.2e-81 305.4 204 72.1
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 3.2e-81 305.4 209 71.8
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 5.5e-81 304.7 210 68.1
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 9.3e-81 303.9 204 71.1
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 2.1e-80 302.8 204 70.6
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 2.1e-80 302.8 204 70.6
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 2.7e-80 302.4 203 71.4
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 2.7e-80 302.4 206 71.4
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 6.0e-80 301.2 204 70.6
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 6.0e-80 301.2 204 70.1
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 7.9e-80 300.8 190 74.2
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 1.8e-79 299.7 196 73.0
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 5.1e-79 298.1 204 70.1
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 6.7e-79 297.7 202 72.3
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 1.1e-78 297.0 204 72.1
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 7.4e-78 294.3 174 79.3
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 1.3e-77 293.5 205 68.8
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 1.4e-76 290.0 174 75.9
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 4.5e-75 285.0 198 67.7
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 1.0e-74 283.9 171 78.4
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 4.2e-73 278.5 201 65.7
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 4.6e-72 275.0 204 66.7
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 7.9e-72 274.2 194 66.0
Cpa.g.sc23.140 Carica papaya HOM05D005850 ORTHO05D007405 3.7e-69 265.4 169 74.6
Hund09181 Selenicereus undatus HOM05D005850 ORTHO05D007405 5.3e-68 261.5 160 75.0
MD02G1053400 Malus domestica HOM05D005850 ORTHO05D007405 2.0e-67 259.6 169 78.1
Duzib168G1614 Durio zibethinus HOM05D005850 ORTHO05D007405 2.9e-66 255.8 169 73.4
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 9.4e-65 250.8 193 61.7
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 1.0e-63 247.3 138 81.9
AUR62033401 Chenopodium quinoa HOM05D005850 ORTHO05D007405 1.4e-63 246.9 172 68.0
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 1.5e-59 233.4 135 77.8
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 2.5e-57 226.1 181 63.5
CARHR218970 Cardamine hirsuta HOM05D005850 ORTHO05D007405 1.0e-55 220.7 138 73.9
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 2.3e-55 219.5 174 58.0
Haze_25682 Corylus avellana HOM05D005850 ORTHO05D007405 5.7e-54 214.9 198 59.1
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 9.7e-54 214.2 121 79.3
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 3.5e-51 205.7 199 54.8
FAN12G1654 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.5e-51 205.3 131 77.1
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 5.0e-50 201.8 155 65.8
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 1.5e-49 200.3 194 51.5
SMO266G0037 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 2.1e-48 196.4 166 56.6
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 8.0e-48 194.5 186 51.1
MD02G1055000 Malus domestica HOM05D005850 ORTHO05D007405 1.5e-46 190.3 172 61.6
Pp3c8_16220 Physcomitrium patens HOM05D005850 ORTHO05D007405 5.3e-44 181.8 139 59.0
MD02G1054000 Malus domestica HOM05D005850 ORTHO05D007405 9.4e-41 171.0 81 96.3
MD02G1052000 Malus domestica HOM05D005850 ORTHO05D007405 1.6e-40 170.2 109 77.1
AagrBONN_evm.TU.Sc2ySwM_344.854 Anthoceros agrestis HOM05D005850 ORTHO05D007405 2.1e-40 169.9 118 64.4
FAN12G0472 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.4e-38 162.2 108 75.0
Cre02.g104100 Chlamydomonas reinhardtii HOM05D005850 ORTHO05D007405 7.5e-38 161.4 233 38.6
Ah.14g081400 Amaranthus hybridus HOM05D005850 ORTHO05D007405 1.6e-35 153.7 157 52.2
FvH4_4g25970 Fragaria vesca HOM05D005850 ORTHO05D007405 4.2e-33 145.6 116 67.2
MBI01_g03372_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 5.5e-33 145.2 156 50.0
MD02G1051000 Malus domestica HOM05D005850 ORTHO05D007405 2.1e-32 143.3 75 88.0
MD02G1055700 Malus domestica HOM05D005850 ORTHO05D007405 6.1e-32 141.7 125 62.4
SMO297G0022 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 1.1e-25 120.9 153 42.5
CDE07G0597 Ceratophyllum demersum HOM05D005850 ORTHO05D007405 7.8e-19 98.2 91 56.0
Glyma.19G094301 Glycine max HOM05D005850 ORTHO05D007405 3.7e-13 79.3 44 72.7
SEGI_15274 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 3.2e-12 76.3 71 52.1
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 4.6e-11 72.4 198 31.8
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 6.6e-10 68.6 198 29.8
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 6.6e-10 68.6 193 32.1
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 2.5e-09 66.6 192 31.2
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 3.3e-09 66.2 187 29.9
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 1.2e-08 64.3 207 29.5
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 1.2e-08 64.3 48 58.3
MBI01_g03370_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D036566 2.8e-08 63.2 45 66.7
Peaxi162Scf00560g00069 Petunia axillaris HOM05D005850 ORTHO05D036566 2.8e-08 63.2 44 70.5
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 4.7e-08 62.4 187 27.3
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 6.2e-08 62.0 199 29.6
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 6.2e-08 62.0 183 31.1
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 6.2e-08 62.0 191 31.9
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 6.2e-08 62.0 193 28.5
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 1.1e-07 61.2 182 29.1
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 1.1e-07 61.2 186 28.0
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 1.4e-07 60.8 193 29.0
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 1.8e-07 60.5 194 27.3
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 1.8e-07 60.5 187 28.9
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 1.8e-07 60.5 196 29.6
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 3.1e-07 59.7 202 31.2
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 4.0e-07 59.3 188 32.4
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 5.2e-07 58.9 190 32.6
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 2.0e-06 57.0 205 27.8
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 3.4e-06 56.2 187 28.9
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 4.4e-06 55.8 187 28.9
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 5.8e-06 55.5 168 29.2
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 5.8e-06 55.5 187 27.8
GSVIVG01015430001 Vitis vinifera HOM05D005850 ORTHO05D036566 7.5e-06 55.1 47 59.6


User provided reference genes

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