Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 4.7e-43 177.6 96 100.0
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.7e-37 159.1 96 90.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 4.6e-30 134.4 99 80.8
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 2.1e-22 109.0 100 71.0
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 3.9e-21 104.8 99 63.6
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 8.6e-21 103.6 96 65.6
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 1.5e-20 102.8 99 58.6
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 4.3e-20 101.3 102 60.8
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 9.5e-20 100.1 97 59.8
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 9.5e-20 100.1 100 66.0
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.1e-19 99.0 97 60.8
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.8e-19 98.6 100 65.0
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 6.2e-19 97.4 100 60.0
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.1e-18 96.7 97 56.7
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 1.8e-18 95.9 93 59.1
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.8e-18 95.9 100 63.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 6.8e-18 94.0 101 57.4
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.5e-17 92.8 98 55.1
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 2.0e-17 92.4 102 58.8
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 7.6e-17 90.5 102 57.8
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 7.6e-17 90.5 100 61.0
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 7.6e-17 90.5 100 58.0
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.7e-16 89.4 102 57.8
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.7e-16 89.4 98 58.2
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.7e-16 89.4 99 54.5
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.7e-16 89.4 103 55.3
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 2.2e-16 89.0 93 55.9
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 2.2e-16 89.0 99 52.5
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 2.9e-16 88.6 101 57.4
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.7e-16 88.2 106 56.6
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 3.7e-16 88.2 106 56.6
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 3.7e-16 88.2 101 56.4
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 4.9e-16 87.8 94 57.4
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 6.4e-16 87.4 98 55.1
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 6.4e-16 87.4 100 60.0
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.4e-15 86.3 99 58.6
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.9e-15 85.9 102 52.9
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 2.4e-15 85.5 97 57.7
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 2.4e-15 85.5 96 57.3
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 4.1e-15 84.7 96 57.3
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 5.4e-15 84.3 101 56.4
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 5.4e-15 84.3 92 57.6
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 7.1e-15 84.0 100 57.0
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 9.2e-15 83.6 92 62.0
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.2e-14 83.2 101 55.4
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 2.1e-14 82.4 90 56.7
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.1e-14 82.4 98 59.2
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.7e-14 82.0 99 57.6
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 3.5e-14 81.6 101 55.4
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 3.5e-14 81.6 99 52.5
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 4.6e-14 81.3 98 55.1
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 6.0e-14 80.9 103 56.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 6.0e-14 80.9 98 56.1
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.0e-13 80.1 102 52.0
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.7e-13 79.3 64 68.8
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 2.3e-13 79.0 98 53.1
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.0e-13 78.6 112 50.9
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 3.9e-13 78.2 86 53.5
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.6e-13 77.4 96 51.0
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 6.6e-13 77.4 99 53.5
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 8.6e-13 77.0 98 52.0
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.1e-12 76.6 102 56.9
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.5e-12 76.3 94 53.2
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.5e-12 75.5 94 52.1
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 4.3e-12 74.7 98 54.1
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 4.3e-12 74.7 87 51.7
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 5.6e-12 74.3 103 51.5
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 7.3e-12 73.9 94 56.4
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 7.3e-12 73.9 100 50.0
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 9.6e-12 73.6 98 53.1
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 9.6e-12 73.6 98 53.1
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.6e-11 72.8 98 53.1
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.6e-11 72.8 98 53.1
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.6e-11 72.8 65 61.5
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 2.1e-11 72.4 92 54.3
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 2.8e-11 72.0 101 52.5
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 6.2e-11 70.9 93 51.6
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 6.2e-11 70.9 103 51.5
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 8.1e-11 70.5 97 52.6
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 8.1e-11 70.5 98 44.9
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 8.1e-11 70.5 102 47.1
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 1.1e-10 70.1 98 45.9
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 1.8e-10 69.3 93 54.8
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 1.8e-10 69.3 97 52.6
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 1.8e-10 69.3 97 52.6
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 2.4e-10 68.9 98 48.0
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 2.4e-10 68.9 96 49.0
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 3.1e-10 68.6 99 51.5
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 8.9e-10 67.0 87 51.7
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 2.0e-09 65.9 88 51.1
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 4.4e-09 64.7 96 47.9
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 5.8e-09 64.3 65 61.5
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 9.9e-09 63.5 103 45.6
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 3.8e-08 61.6 87 51.7
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 3.8e-08 61.6 102 44.1
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 4.9e-08 61.2 98 49.0
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 6.4e-08 60.8 56 60.7
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 8.4e-08 60.5 66 56.1
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 1.4e-07 59.7 83 51.8
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 7.1e-07 57.4 57 59.6
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 2.7e-06 55.5 93 43.0
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 4.6e-06 54.7 77 50.6
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 6.0e-06 54.3 93 39.8
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 7.8e-06 53.9 89 42.7
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 7.8e-06 53.9 89 46.1


User provided reference genes

Program Settings