Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 5.0e-54 214.2 105 100.0
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 4.8e-25 117.9 75 78.7
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 1.7e-22 109.4 75 72.0
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 6.1e-20 100.9 75 72.0
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 6.1e-20 100.9 75 72.0
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 8.0e-20 100.5 75 70.7
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.0e-19 100.1 75 69.3
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 3.0e-19 98.6 75 70.7
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.3e-17 93.2 72 61.1
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.7e-17 92.8 71 60.6
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.2e-17 92.4 72 59.7
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.2e-17 92.4 72 59.7
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 6.3e-17 90.9 75 57.3
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 6.3e-17 90.9 77 55.8
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.4e-16 89.7 75 58.7
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.8e-16 89.4 79 57.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 3.1e-16 88.6 70 58.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.2e-15 86.7 75 56.0
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 2.7e-15 85.5 75 54.7
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 2.7e-15 85.5 75 58.7
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 2.7e-15 85.5 70 58.6
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 4.5e-15 84.7 70 57.1
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 2.2e-14 82.4 70 55.7
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 3.8e-14 81.6 69 56.5
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 3.8e-14 81.6 75 52.0
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 5.0e-14 81.3 75 53.3
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 5.0e-14 81.3 70 55.7
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 6.5e-14 80.9 70 52.9
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 6.5e-14 80.9 75 50.7
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 6.5e-14 80.9 75 53.3
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 8.5e-14 80.5 75 54.7
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.1e-13 80.1 77 51.9
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.1e-13 80.1 75 50.7
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.1e-13 80.1 67 58.2
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 1.1e-13 80.1 75 57.3
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.5e-13 79.7 76 55.3
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.5e-13 79.7 70 57.1
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.5e-13 79.7 75 53.3
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 1.9e-13 79.3 75 50.7
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.5e-13 79.0 75 54.7
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 2.5e-13 79.0 75 53.3
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 2.5e-13 79.0 75 53.3
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 2.5e-13 79.0 75 53.3
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 2.5e-13 79.0 75 53.3
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 2.5e-13 79.0 75 53.3
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.5e-13 79.0 75 49.3
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 3.2e-13 78.6 70 55.7
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 3.2e-13 78.6 75 52.0
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 3.2e-13 78.6 77 53.2
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 3.2e-13 78.6 75 53.3
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 4.2e-13 78.2 77 51.9
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 4.2e-13 78.2 75 50.7
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 4.2e-13 78.2 76 50.0
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 4.2e-13 78.2 67 56.7
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 4.2e-13 78.2 76 56.6
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 5.5e-13 77.8 70 54.3
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 7.2e-13 77.4 75 49.3
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.2e-12 76.6 77 51.9
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 1.2e-12 76.6 75 49.3
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.2e-12 76.6 69 50.7
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.2e-12 76.6 67 61.2
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 1.6e-12 76.3 70 52.9
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 2.1e-12 75.9 77 51.9
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 3.6e-12 75.1 75 49.3
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 3.6e-12 75.1 83 44.6
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 6.1e-12 74.3 81 49.4
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 6.1e-12 74.3 75 48.0
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 6.1e-12 74.3 77 48.1
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.0e-11 73.6 75 52.0
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.8e-11 72.8 75 48.0
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.8e-11 72.8 69 52.2
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 2.3e-11 72.4 75 49.3
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 3.0e-11 72.0 76 51.3
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 4.0e-11 71.6 92 45.7
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 4.0e-11 71.6 75 52.0
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 4.0e-11 71.6 90 43.3
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.0e-10 69.3 75 46.7
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 2.6e-10 68.9 76 51.3
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.6e-10 68.9 65 52.3
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 2.6e-10 68.9 68 51.5
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 1.3e-09 66.6 75 48.0
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.2e-09 65.9 75 42.7
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 3.7e-09 65.1 56 57.1
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 4.9e-09 64.7 69 46.4
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 8.3e-09 63.9 51 56.9
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 4.1e-08 61.6 51 54.9
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 5.4e-08 61.2 76 42.1
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 4.5e-07 58.2 61 45.9
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 1.0e-06 57.0 76 47.4


User provided reference genes

Program Settings