Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 4.1e-60 234.6 123 100.0
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 1.6e-24 116.3 77 84.4
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 2.8e-24 115.5 76 82.9
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 1.9e-20 102.8 100 62.0
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 1.9e-20 102.8 100 61.0
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.5e-20 102.4 97 61.9
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 3.2e-20 102.1 99 60.6
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.2e-20 102.1 99 60.6
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.2e-20 101.7 99 60.6
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 1.6e-19 99.8 90 63.3
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 8.8e-18 94.0 64 78.1
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.8e-15 86.3 102 50.0
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 6.9e-15 84.3 104 52.9
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 2.6e-14 82.4 102 48.0
MD00G1027200 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-13 79.7 49 83.7
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 6.5e-13 77.8 101 50.5
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.9e-12 76.3 99 48.5
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 1.9e-12 76.3 103 48.5
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 2.7e-11 72.4 98 49.0
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 4.7e-11 71.6 84 51.2
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.7e-11 71.6 104 47.1
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 6.1e-11 71.2 100 45.0
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 7.9e-11 70.9 104 47.1
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.4e-10 70.1 100 47.0
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.8e-10 69.7 104 46.2
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 3.0e-10 68.9 100 43.0
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 8.8e-10 67.4 100 40.0
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.5e-09 66.6 102 44.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 2.0e-09 66.2 99 44.4
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 2.0e-09 66.2 100 44.0
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 3.3e-09 65.5 102 45.1
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 4.4e-09 65.1 99 45.5
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 4.4e-09 65.1 99 42.4
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 7.4e-09 64.3 83 49.4
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 7.4e-09 64.3 120 37.5
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.3e-08 63.5 102 40.2
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.2e-08 62.8 101 42.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 2.8e-08 62.4 102 40.2
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 4.8e-08 61.6 102 39.2
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 4.8e-08 61.6 103 40.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 8.2e-08 60.8 100 42.0
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 8.2e-08 60.8 102 36.3
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 8.2e-08 60.8 121 37.2
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.4e-07 60.1 102 43.1
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.4e-07 60.1 97 42.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.4e-07 60.1 37 78.4
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.8e-07 59.7 101 42.6
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 1.8e-07 59.7 97 40.2
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 2.4e-07 59.3 102 42.2
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.4e-07 59.3 107 41.1
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 2.4e-07 59.3 104 39.4
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 3.1e-07 58.9 67 47.8
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 3.1e-07 58.9 103 40.8
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 7.0e-07 57.8 100 41.0
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.2e-06 57.0 101 40.6
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 2.0e-06 56.2 98 41.8
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 3.4e-06 55.5 101 38.6
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 3.4e-06 55.5 103 38.8
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 5.9e-06 54.7 68 48.5
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 7.7e-06 54.3 68 47.1


User provided reference genes

Program Settings