Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.4e-259 898.3 448 100.0
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 3.8e-228 794.7 448 90.2
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 2.0e-221 772.3 448 86.6
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.6e-205 718.8 450 80.7
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 5.9e-205 717.6 450 80.4
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.2e-204 715.7 450 80.2
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.4e-203 713.0 450 80.0
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 9.4e-203 710.3 445 80.9
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 4.7e-202 708.0 453 79.2
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.8e-201 706.1 449 79.3
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.1e-200 703.4 500 76.6
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 8.2e-199 697.2 448 78.6
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.0e-196 690.3 448 77.9
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 8.8e-193 677.2 408 81.4
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.1e-187 660.2 411 79.3
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.6e-186 655.2 440 73.9
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 4.7e-186 654.8 435 75.6
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 4.7e-186 654.8 410 79.3
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.8e-185 652.9 414 78.3
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 5.7e-184 647.9 413 77.5
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 7.5e-184 647.5 446 73.8
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 9.8e-184 647.1 447 74.0
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.4e-182 643.3 446 74.0
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 4.1e-182 641.7 435 73.6
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 4.1e-182 641.7 415 76.1
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 7.0e-182 641.0 448 73.4
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.9e-181 637.9 457 71.6
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.0e-180 637.1 409 77.3
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.3e-180 636.7 450 72.7
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.8e-180 635.2 457 71.3
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.8e-180 635.2 426 75.1
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 5.0e-180 634.8 428 73.4
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.1e-179 633.6 451 70.7
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 4.2e-179 631.7 395 78.7
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.5e-179 631.3 446 70.6
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 6.1e-178 627.9 446 71.7
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 7.5e-176 620.9 399 74.4
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 1.3e-175 620.2 444 70.7
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.3e-175 620.2 411 74.7
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.2e-175 619.4 412 74.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.2e-175 619.4 455 69.9
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 8.3e-175 617.5 410 73.7
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 8.3e-175 617.5 409 74.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.8e-174 616.3 450 70.0
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.8e-174 616.3 436 70.9
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 3.1e-174 615.5 435 72.4
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.2e-173 613.6 406 73.4
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.6e-173 613.2 430 72.3
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.0e-173 612.8 445 69.9
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.0e-173 612.8 441 70.5
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 5.9e-173 611.3 394 76.1
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.8e-173 610.9 416 71.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 5.0e-172 608.2 450 69.6
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.1e-171 607.1 410 74.1
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.5e-171 605.9 432 69.9
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 3.3e-171 605.5 407 72.0
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.6e-171 604.7 428 70.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.1e-170 602.8 451 69.4
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.1e-170 602.8 445 69.7
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 2.1e-170 602.8 413 73.4
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 4.7e-170 601.7 416 70.7
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 3.1e-169 599.0 428 70.3
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 6.8e-169 597.8 448 68.5
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 6.8e-169 597.8 407 72.5
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 6.8e-169 597.8 428 70.3
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 2.0e-168 596.3 407 72.7
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 2.0e-168 596.3 407 72.7
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 2.0e-168 596.3 400 74.5
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 2.6e-168 595.9 400 75.2
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.8e-168 594.7 415 72.5
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 9.8e-168 594.0 414 72.5
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 4.9e-167 591.7 390 74.6
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.4e-166 590.1 421 71.3
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.4e-166 590.1 421 71.3
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.4e-166 590.1 427 71.7
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.9e-166 589.7 404 72.0
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 5.4e-166 588.2 450 69.8
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.0e-165 586.3 406 71.2
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.0e-165 586.3 445 69.4
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 3.5e-165 585.5 443 67.5
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 6.0e-165 584.7 451 69.0
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.0e-164 583.9 412 71.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.0e-164 582.4 407 71.5
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 3.0e-164 582.4 410 72.7
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 3.9e-164 582.0 439 67.9
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.5e-163 579.3 414 71.0
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 5.6e-163 578.2 400 72.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 9.5e-163 577.4 411 70.1
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 9.5e-163 577.4 413 70.5
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 1.2e-162 577.0 432 67.8
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 2.1e-162 576.2 390 72.1
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 8.0e-162 574.3 359 78.3
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.8e-161 573.2 415 71.8
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 2.3e-161 572.8 419 67.8
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 2.6e-160 569.3 396 70.7
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.6e-160 569.3 433 67.7
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.4e-160 568.5 422 69.9
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 8.3e-159 564.3 395 71.9
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 6.0e-157 558.1 398 69.6
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.9e-155 553.1 428 65.0
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.5e-155 552.7 403 69.0
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 9.5e-155 550.8 420 67.9
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 2.8e-154 549.3 395 69.4
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 3.6e-154 548.9 411 69.1
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.4e-153 547.0 440 63.6
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 2.6e-152 542.7 431 64.3
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 4.4e-152 542.0 410 66.6
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 4.4e-152 542.0 391 68.5
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.7e-151 540.0 392 67.6
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 6.4e-151 538.1 313 84.3
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.4e-150 536.2 391 68.5
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.2e-150 535.8 398 67.1
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 5.4e-150 535.0 421 66.7
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 5.4e-150 535.0 389 69.2
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.2e-149 533.9 391 68.3
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 2.1e-149 533.1 391 67.8
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.1e-148 528.5 444 63.5
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 6.6e-148 528.1 395 66.8
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.2e-146 523.9 312 82.1
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.7e-143 513.5 394 66.5
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 8.4e-143 511.1 392 64.8
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.9e-142 510.0 403 65.0
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.7e-141 506.1 356 69.7
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 8.7e-140 501.1 389 65.0
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.6e-138 496.9 399 64.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.2e-135 486.5 263 89.0
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 7.3e-131 471.5 410 61.2
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.3e-130 470.7 398 59.0
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.5e-125 452.6 386 59.1
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 4.9e-111 405.6 282 72.3
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.1e-110 401.7 250 75.6
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.3e-110 401.4 246 76.4
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.7e-106 389.4 284 69.7
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 4.2e-102 375.9 284 67.6
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 2.2e-98 363.6 412 48.3
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.7e-93 346.7 276 59.1
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.4e-89 334.3 419 45.6
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.8e-89 334.0 399 46.4
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 2.4e-89 333.6 234 69.2
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.5e-86 323.6 250 63.6
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.7e-77 293.5 174 81.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.4e-75 286.6 197 73.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 9.8e-67 258.5 176 71.6
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.6e-64 251.1 280 47.1
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 4.2e-62 243.0 202 58.9
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 8.6e-55 218.8 203 59.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.9e-52 208.8 168 63.1
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.2e-44 183.0 146 61.6
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.0e-43 181.0 231 42.4
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.6e-43 180.6 164 59.1
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 7.5e-43 179.1 118 76.3
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 7.1e-41 172.6 82 98.8
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.8e-36 157.9 251 41.0
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 2.4e-33 147.5 156 50.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.1e-31 139.8 304 32.2
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.3e-30 136.0 297 33.7
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 4.7e-29 133.3 76 82.9
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.1e-28 130.6 258 34.5
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 4.9e-26 123.2 300 33.3
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 6.0e-24 116.3 330 29.7
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.3e-23 115.2 64 79.7
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-23 113.6 64 78.1
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.6e-23 112.8 64 78.1
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 7.6e-19 99.4 122 45.9
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.7e-18 98.2 146 41.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.9e-18 97.4 141 37.6
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.3e-13 82.0 94 48.9
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.1e-12 79.0 105 45.7
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 7.6e-11 72.8 67 49.3
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.8e-10 70.5 195 31.3
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.4e-09 67.8 38 78.9
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 5.1e-07 60.1 195 29.2


User provided reference genes

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