Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1029500 Malus domestica HOM05D006257 ORTHO05D007708 4.9e-115 417.9 230 100.0
MD15G1170900 Malus domestica HOM05D006257 ORTHO05D007708 3.6e-97 358.6 236 86.9
Prupe.7G245400 Prunus persica HOM05D006257 ORTHO05D007708 1.2e-89 333.6 234 79.9
Potri.018G129600 Populus trichocarpa HOM05D006257 ORTHO05D007708 3.1e-77 292.4 236 72.5
Potri.006G067600 Populus trichocarpa HOM05D006257 ORTHO05D007708 1.1e-74 283.9 238 70.6
CiPaw.03G245900 Carya illinoinensis HOM05D006257 ORTHO05D007708 2.1e-73 279.6 233 70.4
CiPaw.04G172800 Carya illinoinensis HOM05D006257 ORTHO05D007708 8.0e-73 277.7 233 68.7
GSVIVG01015564001 Vitis vinifera HOM05D006257 ORTHO05D007708 1.7e-70 270.0 236 67.4
QL02p088998 Quercus lobata HOM05D006257 ORTHO05D007708 1.1e-69 267.3 232 67.2
Sabra06G0050300 Salix brachista HOM05D006257 ORTHO05D007708 1.4e-69 266.9 255 65.1
Thecc.09G128900 Theobroma cacao HOM05D006257 ORTHO05D007708 1.4e-69 266.9 236 66.5
Duzib187G1365 Durio zibethinus HOM05D006257 ORTHO05D007708 3.1e-69 265.8 235 64.7
Gohir.A07G036500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 3.1e-69 265.8 237 65.4
Manes.06G057000 Manihot esculenta HOM05D006257 ORTHO05D007708 3.1e-69 265.8 232 67.7
TAR636G3495 Trochodendron aralioides HOM05D006257 ORTHO05D007708 4.1e-69 265.4 230 66.5
Actinidia21972 Actinidia chinensis HOM05D006257 ORTHO05D007708 5.4e-69 265.0 231 66.7
CsaV3_2G002980 Cucumis sativus L. HOM05D006257 ORTHO05D007708 5.4e-69 265.0 241 65.6
Gorai.001G043000 Gossypium raimondii HOM05D006257 ORTHO05D007708 1.2e-68 263.8 238 65.5
VMungo1215G0813 Vigna mungo HOM05D006257 ORTHO05D007708 1.6e-68 263.5 230 67.4
MELO3C004491.2 Cucumis melo HOM05D006257 ORTHO05D007708 2.0e-68 263.1 237 65.4
Duzib168G0222 Durio zibethinus HOM05D006257 ORTHO05D007708 3.5e-68 262.3 239 64.4
Lj4g0014254 Lotus japonicus HOM05D006257 ORTHO05D007708 4.5e-68 261.9 236 67.4
RcHm_v2.0_Chr2g0088141 Rosa chinensis HOM05D006257 ORTHO05D007708 7.7e-68 261.2 230 69.1
Gohir.D07G040500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 1.0e-67 260.8 241 63.9
Hma1.2p1_0931F.1_g238140 Hydrangea macrophylla HOM05D006257 ORTHO05D007708 1.7e-67 260.0 234 64.1
ClCG11G003160 Citrullus lanatus HOM05D006257 ORTHO05D007708 2.3e-67 259.6 216 67.1
CSS0030940 Camellia sinensis var. sinensis HOM05D006257 ORTHO05D007708 2.9e-67 259.2 236 64.8
PGR102G0698 Punica granatum HOM05D006257 ORTHO05D007708 3.8e-67 258.8 233 64.8
Glyma.06G224200 Glycine max HOM05D006257 ORTHO05D007708 6.6e-67 258.1 233 64.8
Lalb_Chr07g0179081 Lupinus albus HOM05D006257 ORTHO05D007708 6.6e-67 258.1 233 67.4
Actinidia40485 Actinidia chinensis HOM05D006257 ORTHO05D007708 1.9e-66 256.5 233 64.4
Glyma.04G142800 Glycine max HOM05D006257 ORTHO05D007708 2.5e-66 256.1 236 66.5
Sabra18G0110100 Salix brachista HOM05D006257 ORTHO05D007708 2.5e-66 256.1 220 67.7
Phvul.003G166300 Phaseolus vulgaris HOM05D006257 ORTHO05D007708 3.3e-66 255.8 231 66.7
Sed0025440 Sechium edule HOM05D006257 ORTHO05D007708 4.2e-66 255.4 236 64.0
Ciclev10009322m.g Citrus clementina HOM05D006257 ORTHO05D007708 7.2e-66 254.6 244 63.9
Lalb_Chr13g0301741 Lupinus albus HOM05D006257 ORTHO05D007708 9.5e-66 254.2 231 65.4
COL.COLO4_35097 Corchorus olitorius HOM05D006257 ORTHO05D007708 1.2e-65 253.8 237 63.7
Eucgr.C04235 Eucalyptus grandis HOM05D006257 ORTHO05D007708 1.2e-65 253.8 233 63.9
Haze_25555 Corylus avellana HOM05D006257 ORTHO05D007708 2.8e-65 252.7 229 63.3
Atru.chr7.1126 Acer truncatum HOM05D006257 ORTHO05D007708 3.6e-65 252.3 234 63.7
Medtr0339s0030 Medicago truncatula HOM05D006257 ORTHO05D007708 4.7e-65 251.9 230 64.8
TPR.G26482 Trifolium pratense HOM05D006257 ORTHO05D007708 1.8e-64 250.0 230 63.0
arahy.Tifrunner.gnm1.ann1.FTT948 Arachis hypogaea HOM05D006257 ORTHO05D007708 2.3e-64 249.6 232 65.9
FAN26G0886 Fragaria x ananassa HOM05D006257 ORTHO05D007708 3.0e-64 249.2 219 68.0
FAN23G1258 Fragaria x ananassa HOM05D006257 ORTHO05D007708 4.0e-64 248.8 219 67.6
FvH4_1g03010 Fragaria vesca HOM05D006257 ORTHO05D007708 6.8e-64 248.1 219 67.6
FAN28G1785 Fragaria x ananassa HOM05D006257 ORTHO05D007708 3.4e-63 245.7 219 67.1
arahy.Tifrunner.gnm1.ann1.BX3F9W Arachis hypogaea HOM05D006257 ORTHO05D007708 5.7e-63 245.0 233 65.2
Cpa.g.sc46.16 Carica papaya HOM05D006257 ORTHO05D007708 5.7e-63 245.0 240 60.8
vmacro20574 Vaccinium macrocarpon HOM05D006257 ORTHO05D007708 7.5e-63 244.6 232 62.9
Ca_06925_v3 Cicer arietinum L. HOM05D006257 ORTHO05D007708 1.7e-62 243.4 233 62.2
Nitab4.5_0001349g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 1.7e-62 243.4 230 60.9
TWI34G0058 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 4.9e-62 241.9 235 61.7
Cc06_g08290 Coffea canephora HOM05D006257 ORTHO05D007708 6.3e-62 241.5 235 61.7
Nitab4.5_0006319g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 5.4e-61 238.4 230 60.0
Peaxi162Scf00313g00815 Petunia axillaris HOM05D006257 ORTHO05D007708 9.2e-61 237.7 231 62.8
Aqoxy7G02265 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 1.6e-60 236.9 235 61.3
TWI63G0502 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 4.5e-60 235.3 239 61.1
Lj7A424T23 Lonicera japonica HOM05D006257 ORTHO05D007708 1.7e-59 233.4 233 61.8
Lalb_Chr08g0234691 Lupinus albus HOM05D006257 ORTHO05D007708 2.9e-59 232.6 232 61.6
Solyc12g009600.2 Solanum lycopersicum HOM05D006257 ORTHO05D007708 5.0e-59 231.9 229 59.4
Sopen12g004590 Solanum pennellii HOM05D006257 ORTHO05D007708 1.1e-58 230.7 230 58.7
Oeu052179.2 Olea europaea HOM05D006257 ORTHO05D007708 2.5e-58 229.6 230 60.9
MBI04_g29340_MAGBIO Magnolia biondii HOM05D006257 ORTHO05D007708 4.3e-58 228.8 237 61.2
CAN.G551.82 Capsicum annuum HOM05D006257 ORTHO05D007708 7.3e-58 228.0 230 57.4
FAN19G0162 Fragaria x ananassa HOM05D006257 ORTHO05D007708 7.3e-58 228.0 175 74.9
AUR62011151 Chenopodium quinoa HOM05D006257 ORTHO05D007708 1.2e-57 227.3 236 59.7
Glyma.17G113300 Glycine max HOM05D006257 ORTHO05D007708 2.3e-56 223.0 194 66.0
DCAR_020916 Daucus carota HOM05D006257 ORTHO05D007708 4.0e-56 222.2 232 57.8
HanXRQChr10g0315681 Helianthus annuus HOM05D006257 ORTHO05D007708 2.6e-55 219.5 230 58.7
PSO210G1348 Papaver somniferum HOM05D006257 ORTHO05D007708 2.6e-55 219.5 233 57.9
Thhalv10028953m.g Eutrema salsugineum HOM05D006257 ORTHO05D007708 3.4e-55 219.2 225 59.1
PSO210G1954 Papaver somniferum HOM05D006257 ORTHO05D007708 3.4e-55 219.2 231 56.7
C09p02090 Brassica napus HOM05D006257 ORTHO05D007708 9.8e-55 217.6 214 59.3
BolC9t53138H Brassica oleracea HOM05D006257 ORTHO05D007708 1.3e-54 217.2 226 58.8
ECA234G3820 Erigeron canadensis HOM05D006257 ORTHO05D007708 1.3e-54 217.2 230 56.5
BraA09t35849Z Brassica rapa HOM05D006257 ORTHO05D007708 2.2e-54 216.5 226 59.3
AUR62013336 Chenopodium quinoa HOM05D006257 ORTHO05D007708 2.9e-54 216.1 254 54.7
Sp6g02450 Schrenkiella parvula HOM05D006257 ORTHO05D007708 4.9e-54 215.3 225 58.2
CARHR250830 Cardamine hirsuta HOM05D006257 ORTHO05D007708 6.4e-54 214.9 171 69.0
BcaC04g23996 Brassica carinata HOM05D006257 ORTHO05D007708 8.3e-54 214.5 226 58.0
MSTRG.26415 Avicennia marina HOM05D006257 ORTHO05D007708 1.1e-53 214.2 235 60.9
THA.LOC104808977 Tarenaya hassleriana HOM05D006257 ORTHO05D007708 1.1e-53 214.2 231 57.6
EL10Ac8g18684 Beta vulgaris HOM05D006257 ORTHO05D007708 2.4e-53 213.0 189 63.5
A09p01980 Brassica napus HOM05D006257 ORTHO05D007708 4.1e-53 212.2 226 57.5
AT4G02530 Arabidopsis thaliana HOM05D006257 ORTHO05D007708 1.2e-52 210.7 225 57.8
Carub.0006s3460 Capsella rubella HOM05D006257 ORTHO05D007708 1.6e-52 210.3 225 57.8
Hund09262 Selenicereus undatus HOM05D006257 ORTHO05D007708 1.6e-52 210.3 241 53.5
AL6G50510 Arabidopsis lyrata HOM05D006257 ORTHO05D007708 2.7e-52 209.5 225 57.3
TAR625G1128 Trochodendron aralioides HOM05D006257 ORTHO05D007708 3.5e-52 209.1 149 76.5
CDE07G0641 Ceratophyllum demersum HOM05D006257 ORTHO05D007708 4.6e-52 208.8 232 56.9
Oeu038255.2 Olea europaea HOM05D006257 ORTHO05D007708 5.0e-51 205.3 269 50.6
SGA_v2.0_scaffold63G21838 Striga asiatica HOM05D006257 ORTHO05D007708 1.5e-50 203.8 147 74.8
CANSAT11G2152 Cannabis sativa HOM05D006257 ORTHO05D007708 4.3e-50 202.2 134 79.1
Ah.09g225230 Amaranthus hybridus HOM05D006257 ORTHO05D007708 7.3e-50 201.4 172 63.4
Migut.K00442 Erythranthe guttata HOM05D006257 ORTHO05D007708 9.5e-50 201.1 254 52.8
Lsat_1_v5_gn_5_95081 Lactuca sativa HOM05D006257 ORTHO05D007708 1.2e-49 200.7 223 55.2
HPP92_024114 Vanilla planifolia HOM05D006257 ORTHO05D007708 1.2e-49 200.7 179 64.2
HPP92_024119 Vanilla planifolia HOM05D006257 ORTHO05D007708 2.1e-49 199.9 170 67.1
ATR0598G180 Amborella trichopoda HOM05D006257 ORTHO05D007708 4.7e-49 198.7 147 73.5
Os06g0705100 Oryza sativa ssp. japonica HOM05D006257 ORTHO05D007708 4.7e-49 198.7 176 63.1
Aa31LG5G2160 Aethionema arabicum HOM05D006257 ORTHO05D007708 8.9e-48 194.5 235 54.0
Nn8g39488 Nelumbo nucifera HOM05D006257 ORTHO05D007708 3.4e-47 192.6 202 61.4
Zm00001eb227340 Zea mays HOM05D006257 ORTHO05D007708 4.4e-47 192.2 168 61.9
unitig_37.g12643 Utricularia gibba HOM05D006257 ORTHO05D007708 4.1e-45 185.7 235 51.1
Dinv36505 Davidia involucrata HOM05D006257 ORTHO05D007708 3.0e-43 179.5 175 62.3
Manes.14G133800 Manihot esculenta HOM05D006257 ORTHO05D007708 7.3e-42 174.9 171 60.8
Aqoxy7G03671 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 1.6e-41 173.7 196 55.6
Sc14g0000190 Simmondsia chinensis HOM05D006257 ORTHO05D007708 2.8e-41 172.9 181 58.0
Sed0003979 Sechium edule HOM05D006257 ORTHO05D007708 1.2e-36 157.5 195 55.4
BcaC03g16142 Brassica carinata HOM05D006257 ORTHO05D007708 6.6e-35 151.8 140 62.9
Psat4g037320 Pisum sativum HOM05D006257 ORTHO05D007708 9.5e-34 147.9 176 54.0
A02p24830 Brassica napus HOM05D006257 ORTHO05D007708 2.1e-33 146.7 128 63.3
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 5.2e-32 142.1 128 60.9
SMO111G0154 Selaginella moellendorffii HOM05D006257 ORTHO05D007708 6.8e-32 141.7 182 45.1
Mapoly0099s0035 Marchantia polymorpha HOM05D006257 ORTHO05D007708 1.7e-30 137.1 233 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2604 Anthoceros agrestis HOM05D006257 ORTHO05D007708 1.9e-29 133.7 144 52.1
Pp3c8_15020 Physcomitrium patens HOM05D006257 ORTHO05D007708 3.9e-27 125.9 199 40.2
SEGI_32211 Sequoiadendron giganteum HOM05D006257 ORTHO05D007708 2.4e-21 106.7 104 52.9
Mapoly0522s0001 Marchantia polymorpha HOM05D006257 ORTHO05D007708 8.7e-19 98.2 106 50.9
FAN19G1291 Fragaria x ananassa HOM05D006257 ORTHO05D007708 7.3e-18 95.1 111 55.0
C02p39320 Brassica napus HOM05D006257 ORTHO05D007708 4.8e-17 92.4 75 64.0
Pp3c24_6770 Physcomitrium patens HOM05D006257 ORTHO05D007708 1.1e-16 91.3 105 49.5
BcaB05g23639 Brassica carinata HOM05D006257 ORTHO05D007708 2.5e-10 70.1 82 57.3
PRCOL_00001366 Prasinoderma coloniale HOM05D006257 ORTHO05D007708 5.8e-07 58.9 159 33.3
Cre06.g256250 Chlamydomonas reinhardtii HOM05D006257 ORTHO05D007708 7.6e-07 58.5 162 28.4


User provided reference genes

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