Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.6e-64 249.2 124 100.0
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.5e-57 226.1 124 88.7
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.1e-56 222.2 124 87.9
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 2.1e-51 205.7 124 82.3
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 4.6e-51 204.5 124 79.8
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 6.1e-51 204.1 119 80.7
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 6.1e-51 204.1 119 80.7
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.0e-50 203.4 124 76.6
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 5.1e-50 201.1 122 80.3
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 6.7e-50 200.7 122 80.3
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 1.1e-49 199.9 124 80.6
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.5e-49 199.5 122 79.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.9e-49 199.1 122 80.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.9e-49 199.1 124 80.6
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.9e-49 199.1 124 80.6
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 2.5e-49 198.7 124 75.8
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 4.3e-49 198.0 124 75.8
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 5.7e-49 197.6 119 78.2
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 9.7e-49 196.8 121 78.5
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.3e-48 196.4 119 80.7
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.3e-48 196.4 124 75.8
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 2.8e-48 195.3 121 78.5
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 4.8e-48 194.5 122 75.4
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.3e-48 194.1 119 79.8
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 8.2e-48 193.7 124 77.4
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.4e-47 193.0 116 78.4
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 1.4e-47 193.0 124 75.0
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.8e-47 192.6 119 75.6
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.8e-47 192.6 124 75.0
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 2.4e-47 192.2 122 77.0
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 3.1e-47 191.8 124 75.0
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 3.1e-47 191.8 123 75.6
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 4.1e-47 191.4 124 75.0
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 4.1e-47 191.4 119 75.6
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 6.9e-47 190.7 122 74.6
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 6.9e-47 190.7 122 73.8
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 6.9e-47 190.7 119 74.8
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 6.9e-47 190.7 123 72.4
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 6.9e-47 190.7 119 73.9
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 9.0e-47 190.3 124 74.2
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 1.2e-46 189.9 124 72.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.2e-46 189.9 122 73.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.5e-46 189.5 123 74.0
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.0e-46 189.1 124 71.8
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.0e-46 189.1 124 70.2
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.6e-46 188.7 124 75.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 4.5e-46 188.0 119 74.8
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 4.5e-46 188.0 119 74.8
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 4.5e-46 188.0 124 72.6
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 4.5e-46 188.0 119 74.8
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 4.5e-46 188.0 124 71.8
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 7.7e-46 187.2 124 72.6
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 1.0e-45 186.8 119 73.9
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.0e-45 186.8 119 74.8
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 1.3e-45 186.4 124 71.8
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.3e-45 186.4 119 73.9
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.7e-45 186.0 124 73.4
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.7e-45 186.0 122 74.6
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.7e-45 186.0 124 71.8
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.7e-45 186.0 124 71.8
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 2.2e-45 185.7 120 72.5
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.9e-45 185.3 124 71.8
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 3.8e-45 184.9 124 71.0
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 5.0e-45 184.5 124 69.4
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 6.5e-45 184.1 119 73.1
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 8.5e-45 183.7 123 69.9
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 8.5e-45 183.7 119 72.3
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 8.5e-45 183.7 120 74.2
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.1e-44 183.3 120 70.8
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.1e-44 183.3 123 69.9
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.1e-44 183.3 119 71.4
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.1e-44 183.3 124 71.0
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.4e-44 183.0 120 71.7
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.4e-44 183.0 124 69.4
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 1.4e-44 183.0 122 73.0
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.5e-44 182.2 123 69.1
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 4.2e-44 181.4 120 71.7
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 5.5e-44 181.0 120 70.8
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.2e-43 179.9 124 68.5
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 1.2e-43 179.9 124 68.5
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.1e-43 179.1 120 70.8
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.1e-43 179.1 120 70.8
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.7e-43 178.7 113 73.5
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 4.6e-43 177.9 122 67.2
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 6.1e-43 177.6 120 70.0
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 6.1e-43 177.6 120 69.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 6.1e-43 177.6 120 69.2
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 6.1e-43 177.6 120 70.0
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.0e-42 176.8 124 68.5
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.0e-42 176.8 124 70.2
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.4e-42 176.4 124 69.4
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 2.3e-42 175.6 145 64.1
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.0e-42 175.3 119 70.6
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 3.9e-42 174.9 124 70.2
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 3.9e-42 174.9 120 69.2
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.9e-42 174.9 119 70.6
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 5.1e-42 174.5 119 71.4
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.1e-41 173.3 120 67.5
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.1e-41 173.3 124 68.5
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.0e-41 172.6 124 67.7
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.1e-39 166.8 190 50.5
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.1e-39 164.9 119 73.1
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 4.1e-39 164.9 110 69.1
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.9e-39 164.1 119 62.2
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 9.1e-39 163.7 119 63.0
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.0e-38 162.5 119 62.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 3.4e-38 161.8 101 76.2
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.0e-37 160.2 123 58.5
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 1.3e-37 159.8 119 61.3
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.8e-37 158.3 119 59.7
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 6.1e-35 151.0 123 57.7
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.8e-34 149.4 92 78.3
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.1e-33 146.7 97 70.1
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 9.7e-33 143.7 213 40.8
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 2.4e-31 139.0 83 79.5
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 3.2e-28 128.6 123 49.6
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 8.0e-27 124.0 120 50.0
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 2.0e-25 119.4 121 50.4
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.8e-24 114.8 69 78.3
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.3e-23 111.3 78 67.9
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 7.2e-20 100.9 68 69.1
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 1.6e-19 99.8 68 73.5
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.0e-18 95.1 61 72.1
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.0e-18 95.1 61 72.1
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.0e-13 80.5 78 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 5.5e-12 74.7 62 56.5
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 9.8e-09 63.9 63 50.8
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 3.7e-08 62.0 100 35.0
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 4.1e-07 58.5 74 40.5
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 5.4e-07 58.2 67 40.3
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 9.2e-07 57.4 67 40.3
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.2e-06 57.0 67 40.3
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.0e-06 56.2 74 40.5
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.7e-06 55.8 78 37.2
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 4.5e-06 55.1 67 38.8
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 5.9e-06 54.7 93 33.3
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 5.9e-06 54.7 74 36.5
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 5.9e-06 54.7 74 36.5
Mapoly0002s0272 Marchantia polymorpha HOM05D002832 ORTHO05D008667 7.7e-06 54.3 100 36.0


User provided reference genes

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