Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 0.0e+00 1256.5 630 100.0
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 0.0e+00 1087.0 628 87.1
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.6e-293 1012.3 626 83.1
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 1.1e-292 1009.6 625 82.9
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 4.0e-292 1007.7 625 82.6
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 2.0e-291 1005.4 625 82.4
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 2.3e-287 991.9 656 79.0
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 9.0e-276 953.4 631 78.0
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 3.9e-271 937.9 668 73.8
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 4.8e-269 931.0 629 75.2
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 1.8e-268 929.1 625 76.0
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 4.0e-268 927.9 633 75.8
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 2.0e-267 925.6 639 75.1
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 3.4e-267 924.9 588 79.6
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 3.4e-267 924.9 588 79.6
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 1.1e-265 919.8 630 74.6
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 1.8e-263 912.5 631 73.4
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 1.9e-262 909.1 588 76.7
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 4.3e-262 907.9 605 75.5
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 3.4e-259 898.3 616 74.8
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 2.9e-258 895.2 610 73.9
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 1.1e-257 893.3 627 73.0
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 2.3e-255 885.6 635 71.8
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 5.1e-255 884.4 603 75.0
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.9e-254 882.5 624 72.8
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 2.5e-254 882.1 624 72.6
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 3.3e-254 881.7 601 73.9
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 9.6e-254 880.2 624 72.8
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 6.2e-253 877.5 634 71.9
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 1.1e-252 876.7 673 67.6
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 6.9e-252 874.0 626 71.1
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 9.0e-252 873.6 586 74.7
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 1.0e-250 870.2 623 71.6
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 1.0e-250 870.2 633 71.9
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 6.1e-248 860.9 605 73.4
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 3.0e-247 858.6 633 70.3
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 3.9e-247 858.2 629 70.4
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 1.1e-246 856.7 599 72.5
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 1.1e-246 856.7 626 70.0
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 1.5e-246 856.3 603 71.8
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 1.5e-246 856.3 588 74.1
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 3.3e-246 855.1 599 72.0
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 7.4e-246 854.0 621 70.9
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 1.6e-245 852.8 609 71.1
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 4.8e-245 851.3 620 70.5
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 4.8e-245 851.3 628 70.4
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 4.8e-245 851.3 586 72.2
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 4.8e-245 851.3 604 71.4
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 8.2e-245 850.5 610 71.0
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 8.2e-245 850.5 612 70.3
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 1.1e-244 850.1 605 71.2
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 1.4e-244 849.7 605 71.2
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 3.1e-244 848.6 599 71.8
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 1.2e-243 846.7 596 74.2
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 2.0e-243 845.9 627 69.9
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 2.0e-243 845.9 632 69.3
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 2.0e-243 845.9 603 71.5
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 2.9e-242 842.0 648 68.2
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 3.8e-242 841.6 614 70.0
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 3.8e-242 841.6 614 70.0
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 6.5e-242 840.9 601 70.9
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 8.5e-242 840.5 588 72.6
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 1.1e-241 840.1 643 68.4
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 2.5e-241 839.0 621 69.1
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 4.2e-241 838.2 588 72.3
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 7.2e-241 837.4 589 72.8
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 2.1e-240 835.9 634 68.8
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 2.1e-240 835.9 619 70.3
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 6.1e-240 834.3 606 70.0
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 1.3e-237 826.6 609 68.3
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 1.3e-237 826.6 590 71.5
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 4.5e-235 818.1 596 70.5
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 1.4e-233 813.1 638 67.6
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 9.7e-230 800.4 588 70.2
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 1.8e-228 796.2 620 67.3
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 3.1e-228 795.4 589 69.8
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 2.6e-227 792.3 571 70.8
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 1.1e-225 786.9 628 65.6
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 1.2e-224 783.5 526 74.9
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 9.7e-222 773.9 593 65.9
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 1.7e-221 773.1 638 63.8
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 1.8e-220 769.6 612 63.7
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 1.9e-217 759.6 592 65.4
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 8.8e-215 750.7 588 67.7
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 4.1e-212 741.9 630 64.1
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 1.2e-211 740.3 522 71.5
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 1.0e-210 737.3 622 63.5
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 1.1e-209 733.8 606 63.0
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 1.5e-198 696.8 495 70.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.8e-192 676.0 558 62.5
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 1.0e-178 630.9 443 72.5
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 2.3e-170 603.2 1167 36.3
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 1.9e-161 573.5 605 52.1
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 2.5e-161 573.2 602 52.7
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 3.1e-159 566.2 412 72.6
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 2.6e-158 563.1 564 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 5.4e-156 555.4 608 50.3
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 9.0e-143 511.5 323 75.9
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 5.5e-132 475.7 332 71.1
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 9.7e-129 464.9 323 71.8
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 1.2e-115 421.4 562 45.2
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 1.8e-114 417.5 669 40.2
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 9.1e-111 405.2 432 51.2
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 2.0e-105 387.5 311 66.9
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.4e-95 354.8 306 62.7
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 5.4e-95 352.8 464 47.4
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 1.6e-91 341.3 275 65.8
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 1.2e-86 325.1 285 63.5
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 1.8e-82 311.2 195 77.9
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 4.7e-67 260.0 146 84.9
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 1.3e-64 251.9 594 33.2
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 3.1e-50 204.1 125 81.6
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.6e-46 191.8 125 74.4
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 9.6e-44 182.6 146 66.4
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 1.3e-43 182.2 232 51.7
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 4.2e-31 140.6 77 88.3
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 4.2e-31 140.6 102 67.6
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 2.4e-26 124.8 128 57.0
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 1.7e-24 118.6 91 65.9
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 5.5e-23 113.6 77 68.8
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 3.3e-20 104.4 98 53.1
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 5.9e-17 93.6 53 77.4
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 3.2e-15 87.8 140 43.6
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 5.5e-15 87.0 68 61.8
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 1.2e-14 85.9 57 75.4
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 1.9e-12 78.6 69 56.5


User provided reference genes

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