Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 7.8e-52 206.8 104 100.0
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 4.8e-49 197.6 104 95.2
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 4.4e-47 191.0 104 92.3
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 4.2e-45 184.5 104 88.5
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 7.1e-45 183.7 104 89.4
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 9.3e-45 183.3 104 85.6
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 2.1e-44 182.2 104 87.5
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.7e-43 179.1 104 82.7
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 1.7e-43 179.1 104 82.7
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 2.3e-43 178.7 104 83.7
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 5.1e-43 177.6 104 85.6
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 8.7e-43 176.8 104 82.7
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 1.9e-42 175.6 105 84.8
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 2.5e-42 175.3 102 83.3
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 2.5e-42 175.3 102 83.3
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 4.3e-42 174.5 105 83.8
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 5.6e-42 174.1 105 81.9
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.3e-42 173.7 101 84.2
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 1.6e-41 172.6 104 77.9
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 2.8e-41 171.8 104 81.7
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 2.8e-41 171.8 105 82.9
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 3.6e-41 171.4 102 81.4
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 8.1e-41 170.2 104 81.7
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 8.1e-41 170.2 103 82.5
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 1.1e-40 169.9 102 81.4
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 1.1e-40 169.9 104 81.7
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 2.4e-40 168.7 103 80.6
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 3.1e-40 168.3 99 82.8
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 5.3e-40 167.5 104 82.7
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 5.3e-40 167.5 103 78.6
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 5.3e-40 167.5 104 77.9
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 1.5e-39 166.0 102 80.4
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.5e-39 166.0 104 78.8
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 2.0e-39 165.6 102 79.4
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 2.0e-39 165.6 104 76.9
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 2.0e-39 165.6 104 78.8
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 2.6e-39 165.2 102 80.4
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 2.6e-39 165.2 102 80.4
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 1.3e-38 162.9 104 76.9
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.3e-38 162.9 101 77.2
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 2.2e-38 162.2 104 76.9
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 3.8e-38 161.4 104 74.0
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 6.4e-38 160.6 100 78.0
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 6.4e-38 160.6 101 77.2
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 6.4e-38 160.6 104 76.0
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 1.9e-37 159.1 104 75.0
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 2.4e-37 158.7 92 84.8
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 3.2e-37 158.3 103 76.7
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 3.2e-37 158.3 104 75.0
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 4.2e-37 157.9 104 75.0
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 5.4e-37 157.5 104 72.1
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 7.1e-37 157.1 95 81.1
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 2.7e-36 155.2 95 83.2
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 3.5e-36 154.8 99 77.8
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 4.6e-36 154.5 97 78.4
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 6.0e-36 154.1 97 78.4
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 7.9e-36 153.7 102 73.5
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 1.3e-35 152.9 95 78.9
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 2.3e-35 152.1 101 72.3
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 3.0e-35 151.8 104 69.2
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 1.1e-34 149.8 99 72.7
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 1.9e-34 149.1 105 71.4
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 4.3e-34 147.9 99 72.7
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 5.6e-34 147.5 97 74.2
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 9.6e-34 146.7 104 71.2
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 1.6e-33 146.0 92 78.3
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 1.6e-33 146.0 92 77.2
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 1.6e-33 146.0 92 80.4
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 2.8e-33 145.2 100 72.0
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 2.8e-33 145.2 92 78.3
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 1.1e-32 143.3 100 74.0
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 1.1e-32 143.3 103 70.9
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 5.3e-32 141.0 92 75.0
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 5.3e-32 141.0 102 69.6
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 5.3e-32 141.0 89 76.4
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 6.9e-32 140.6 90 77.8
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 3.4e-31 138.3 100 67.0
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 4.5e-31 137.9 90 75.6
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 4.5e-31 137.9 90 75.6
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 1.7e-30 136.0 92 72.8
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 1.7e-30 136.0 94 73.4
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 2.2e-30 135.6 92 72.8
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 3.8e-30 134.8 92 70.7
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 3.8e-30 134.8 90 74.4
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 3.8e-30 134.8 92 71.7
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 3.8e-30 134.8 93 71.0
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 4.9e-30 134.4 92 71.7
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 1.1e-29 133.3 91 70.3
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 1.9e-29 132.5 90 72.2
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 9.3e-29 130.2 76 85.5
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 3.5e-28 128.3 76 84.2
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 1.9e-26 122.5 76 80.3
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 2.5e-26 122.1 76 78.9
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 1.3e-25 119.8 99 59.6
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 6.2e-25 117.5 76 75.0
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 6.2e-25 117.5 75 76.0
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 8.2e-25 117.1 90 67.8
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 2.4e-24 115.5 80 72.5
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 5.3e-24 114.4 79 72.2
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 9.0e-24 113.6 64 84.4
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 2.0e-23 112.5 74 74.3
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 5.8e-23 110.9 74 73.0
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 1.3e-22 109.8 75 73.3
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 1.1e-21 106.7 100 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.2e-20 103.2 92 60.9
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 2.1e-20 102.4 85 61.2
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 1.8e-19 99.4 64 78.1
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 7.4e-18 94.0 73 63.0
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 9.7e-18 93.6 90 54.4
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 1.4e-16 89.7 86 52.3
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 9.0e-16 87.0 62 74.2
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 1.3e-14 83.2 75 57.3
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 2.9e-14 82.0 87 49.4
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 8.5e-14 80.5 98 49.0
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 1.9e-13 79.3 52 75.0
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 2.7e-12 75.5 101 45.5
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 7.9e-12 73.9 87 47.1
MCO12G243 Micromonas commoda HOM05D006914 ORTHO05D008583 1.7e-06 56.2 115 36.5
C08p16940 Brassica napus HOM05D006914 ORTHO05D008583 3.8e-06 55.1 37 67.6


User provided reference genes

Program Settings