Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1000300 Malus domestica HOM05D003449 ORTHO05D004133 1.6e-105 386.0 180 100.0
Prupe.7G270600 Prunus persica HOM05D003449 ORTHO05D004133 5.2e-43 178.3 120 71.7
MD15G1142600 Malus domestica HOM05D003449 ORTHO05D004133 2.8e-41 172.6 117 71.8
FvH4_1g00120 Fragaria vesca HOM05D003449 ORTHO05D004133 6.1e-36 154.8 117 64.1
FAN28G2575 Fragaria x ananassa HOM05D003449 ORTHO05D004133 8.0e-36 154.5 117 64.1
FvH4_6g52520 Fragaria vesca HOM05D003449 ORTHO05D004133 3.0e-35 152.5 117 63.2
FAN05G5719 Fragaria x ananassa HOM05D003449 ORTHO05D004133 4.0e-35 152.1 117 63.2
FAN14G1536 Fragaria x ananassa HOM05D003449 ORTHO05D004133 6.8e-35 151.4 116 63.8
Haze_11115 Corylus avellana HOM05D003449 ORTHO05D004133 9.8e-34 147.5 117 61.5
QL10p064632 Quercus lobata HOM05D003449 ORTHO05D004133 1.3e-33 147.1 119 62.2
QL10p065753 Quercus lobata HOM05D003449 ORTHO05D004133 1.7e-33 146.7 119 62.2
RcHm_v2.0_Chr2g0084431 Rosa chinensis HOM05D003449 ORTHO05D004133 1.7e-33 146.7 120 60.8
Cfa008526 Carpinus fangiana HOM05D003449 ORTHO05D004133 2.8e-33 146.0 117 59.8
Nn1g09408 Nelumbo nucifera HOM05D003449 ORTHO05D004133 4.1e-32 142.1 116 58.6
CiPaw.01G202400 Carya illinoinensis HOM05D003449 ORTHO05D004133 9.1e-32 141.0 117 58.1
Nitab4.5_0000160g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 5.9e-31 138.3 120 55.0
Rhsim02G0176000 Rhododendron simsii HOM05D003449 ORTHO05D004133 1.0e-30 137.5 119 56.3
Rhsim09G0002700 Rhododendron simsii HOM05D003449 ORTHO05D004133 1.0e-30 137.5 119 56.3
CSS0049757 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 1.7e-30 136.7 120 56.7
Dinv24747 Davidia involucrata HOM05D003449 ORTHO05D004133 2.3e-30 136.3 120 56.7
Lalb_Chr09g0320201 Lupinus albus HOM05D003449 ORTHO05D004133 2.3e-30 136.3 120 55.8
CSS0008419 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 2.9e-30 136.0 120 56.7
Nitab4.5_0007046g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 3.8e-30 135.6 119 53.8
CSS0013125 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 6.5e-30 134.8 120 55.8
CANSAT54G1991 Cannabis sativa HOM05D003449 ORTHO05D004133 1.1e-29 134.0 117 54.7
GSVIVG01038259001 Vitis vinifera HOM05D003449 ORTHO05D004133 1.9e-29 133.3 119 55.5
Potri.017G002000 Populus trichocarpa HOM05D003449 ORTHO05D004133 3.2e-29 132.5 120 54.2
Ah.07g203300 Amaranthus hybridus HOM05D003449 ORTHO05D004133 9.5e-29 131.0 120 50.8
Ciclev10019560m.g Citrus clementina HOM05D003449 ORTHO05D004133 9.5e-29 131.0 119 52.9
Atru.chr8.1212 Acer truncatum HOM05D003449 ORTHO05D004133 1.6e-28 130.2 120 54.2
Migut.G00914 Erythranthe guttata HOM05D003449 ORTHO05D004133 1.6e-28 130.2 119 56.3
Glyma.11G010700 Glycine max HOM05D003449 ORTHO05D004133 1.6e-28 130.2 120 53.3
PSO675G3012 Papaver somniferum HOM05D003449 ORTHO05D004133 2.1e-28 129.8 119 52.9
vmacro17029 Vaccinium macrocarpon HOM05D003449 ORTHO05D004133 2.8e-28 129.4 115 56.5
Actinidia18391 Actinidia chinensis HOM05D003449 ORTHO05D004133 3.6e-28 129.0 119 54.6
COL.COLO4_20652 Corchorus olitorius HOM05D003449 ORTHO05D004133 4.7e-28 128.6 118 53.4
Duzib128G1428 Durio zibethinus HOM05D003449 ORTHO05D004133 4.7e-28 128.6 118 54.2
AUR62023694 Chenopodium quinoa HOM05D003449 ORTHO05D004133 6.1e-28 128.3 119 52.9
Sc25g0002200 Simmondsia chinensis HOM05D003449 ORTHO05D004133 6.1e-28 128.3 120 52.5
Thecc.05G001100 Theobroma cacao HOM05D003449 ORTHO05D004133 6.1e-28 128.3 118 52.5
Sopen12g008760 Solanum pennellii HOM05D003449 ORTHO05D004133 1.0e-27 127.5 119 50.4
arahy.Tifrunner.gnm1.ann1.D2PEHJ Arachis hypogaea HOM05D003449 ORTHO05D004133 1.8e-27 126.7 120 53.3
Lj6g0003881 Lotus japonicus HOM05D003449 ORTHO05D004133 1.8e-27 126.7 149 45.6
LjContig00222g0025650 Lotus japonicus HOM05D003449 ORTHO05D004133 1.8e-27 126.7 149 45.6
Manes.05G207700 Manihot esculenta HOM05D003449 ORTHO05D004133 1.8e-27 126.7 119 52.1
SGA_v2.0_scaffold319G48551 Striga asiatica HOM05D003449 ORTHO05D004133 1.8e-27 126.7 120 53.3
arahy.Tifrunner.gnm1.ann1.4WT42H Arachis hypogaea HOM05D003449 ORTHO05D004133 5.2e-27 125.2 127 52.0
Potri.007G145800 Populus trichocarpa HOM05D003449 ORTHO05D004133 6.8e-27 124.8 119 52.1
Phvul.007G277700 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 1.5e-26 123.6 120 51.7
SHI01241 Sapria himalayana HOM05D003449 ORTHO05D004133 1.5e-26 123.6 123 53.7
Sopen12g032430 Solanum pennellii HOM05D003449 ORTHO05D004133 1.5e-26 123.6 119 51.3
Aqoxy4G00018 Aquilegia oxysepala HOM05D003449 ORTHO05D004133 2.6e-26 122.9 116 50.9
VMungo1215G1665 Vigna mungo HOM05D003449 ORTHO05D004133 2.6e-26 122.9 120 52.5
arahy.Tifrunner.gnm1.ann1.MLK5V4 Arachis hypogaea HOM05D003449 ORTHO05D004133 3.4e-26 122.5 120 51.7
MBI07_g42065_MAGBIO Magnolia biondii HOM05D003449 ORTHO05D004133 3.4e-26 122.5 119 52.9
PGR031G2246 Punica granatum HOM05D003449 ORTHO05D004133 3.4e-26 122.5 117 49.6
PGSC0003DMG400029361 Solanum tuberosum HOM05D003449 ORTHO05D004133 3.4e-26 122.5 119 51.3
TWI63G1020 Tripterygium wilfordii HOM05D003449 ORTHO05D004133 4.4e-26 122.1 116 53.4
Gohir.A01G231600 Gossypium hirsutum HOM05D003449 ORTHO05D004133 5.7e-26 121.7 118 52.5
Gohir.D01G221700 Gossypium hirsutum HOM05D003449 ORTHO05D004133 5.7e-26 121.7 118 52.5
Gorai.002G268300 Gossypium raimondii HOM05D003449 ORTHO05D004133 5.7e-26 121.7 118 52.5
Oeu050305.2 Olea europaea HOM05D003449 ORTHO05D004133 5.7e-26 121.7 125 52.0
Lsat_1_v5_gn_1_77061 Lactuca sativa HOM05D003449 ORTHO05D004133 7.5e-26 121.3 116 54.3
TPR.G12250 Trifolium pratense HOM05D003449 ORTHO05D004133 9.8e-26 120.9 120 50.8
CAN.G566.43 Capsicum annuum HOM05D003449 ORTHO05D004133 1.7e-25 120.2 119 49.6
CsaV3_2G011270 Cucumis sativus L. HOM05D003449 ORTHO05D004133 2.2e-25 119.8 117 51.3
Medtr3g029520 Medicago truncatula HOM05D003449 ORTHO05D004133 2.2e-25 119.8 149 43.0
Phvul.007G074100 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 2.2e-25 119.8 120 51.7
CARHR125550 Cardamine hirsuta HOM05D003449 ORTHO05D004133 2.8e-25 119.4 119 51.3
AL4G27160 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 3.7e-25 119.0 119 49.6
Carub.0004s1317 Capsella rubella HOM05D003449 ORTHO05D004133 3.7e-25 119.0 119 50.4
CDE02G4666 Ceratophyllum demersum HOM05D003449 ORTHO05D004133 3.7e-25 119.0 119 52.1
Aa31LG5G5180 Aethionema arabicum HOM05D003449 ORTHO05D004133 4.9e-25 118.6 119 49.6
Cpa.g.sc9.246 Carica papaya HOM05D003449 ORTHO05D004133 4.9e-25 118.6 119 50.4
ATR0743G113 Amborella trichopoda HOM05D003449 ORTHO05D004133 6.3e-25 118.2 116 49.1
Nitab4.5_0001110g0060 Nicotiana tabacum HOM05D003449 ORTHO05D004133 6.3e-25 118.2 116 51.7
PGR042G0752 Punica granatum HOM05D003449 ORTHO05D004133 8.3e-25 117.9 116 50.9
ECA248G0698 Erigeron canadensis HOM05D003449 ORTHO05D004133 1.1e-24 117.5 117 52.1
BcaB06g28571 Brassica carinata HOM05D003449 ORTHO05D004133 1.4e-24 117.1 119 48.7
ClCG06G009820 Citrullus lanatus HOM05D003449 ORTHO05D004133 1.4e-24 117.1 116 51.7
Gohir.D04G099801 Gossypium hirsutum HOM05D003449 ORTHO05D004133 1.4e-24 117.1 118 50.8
HanXRQChr11g0343511 Helianthus annuus HOM05D003449 ORTHO05D004133 1.4e-24 117.1 116 50.0
THA.LOC104800937 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 1.8e-24 116.7 119 47.9
C04p60860 Brassica napus HOM05D003449 ORTHO05D004133 2.4e-24 116.3 119 50.4
SGA_v2.0_scaffold12G06234 Striga asiatica HOM05D003449 ORTHO05D004133 2.4e-24 116.3 118 50.0
A04p24130 Brassica napus HOM05D003449 ORTHO05D004133 3.1e-24 115.9 119 49.6
BraA04t17933Z Brassica rapa HOM05D003449 ORTHO05D004133 3.1e-24 115.9 119 49.6
Ca_14410_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 3.1e-24 115.9 149 41.6
Phvul.002G039900 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 4.1e-24 115.5 121 50.4
BcaB06g28530 Brassica carinata HOM05D003449 ORTHO05D004133 5.4e-24 115.2 119 49.6
Cc03_g16150 Coffea canephora HOM05D003449 ORTHO05D004133 5.4e-24 115.2 116 50.0
BcaC02g07961 Brassica carinata HOM05D003449 ORTHO05D004133 7.0e-24 114.8 119 47.9
CARHR125560 Cardamine hirsuta HOM05D003449 ORTHO05D004133 7.0e-24 114.8 119 47.9
Ca_14797_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 1.2e-23 114.0 149 40.9
BcaB06g28570 Brassica carinata HOM05D003449 ORTHO05D004133 2.0e-23 113.2 119 47.1
Sp2g03830 Schrenkiella parvula HOM05D003449 ORTHO05D004133 2.0e-23 113.2 119 47.9
Sp4g14220 Schrenkiella parvula HOM05D003449 ORTHO05D004133 2.0e-23 113.2 119 47.1
Thhalv10016696m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 2.7e-23 112.8 119 46.2
MELO3C031172.2 Cucumis melo HOM05D003449 ORTHO05D004133 3.5e-23 112.5 117 48.7
THA.LOC104800936 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 3.5e-23 112.5 119 47.1
THA.LOC104800938 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 3.5e-23 112.5 119 48.7
BolC4t27577H Brassica oleracea HOM05D003449 ORTHO05D004133 4.5e-23 112.1 119 48.7
CARHR125360 Cardamine hirsuta HOM05D003449 ORTHO05D004133 4.5e-23 112.1 119 47.1
Thhalv10016528m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 4.5e-23 112.1 119 48.7
THA.LOC104800934 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 5.9e-23 111.7 119 49.6
Aa31sc989G10 Aethionema arabicum HOM05D003449 ORTHO05D004133 7.8e-23 111.3 119 51.3
EL10Ac3g06177 Beta vulgaris HOM05D003449 ORTHO05D004133 7.8e-23 111.3 119 47.9
C04p61440 Brassica napus HOM05D003449 ORTHO05D004133 7.8e-23 111.3 119 47.1
BolC4t27628H Brassica oleracea HOM05D003449 ORTHO05D004133 7.8e-23 111.3 119 47.1
BraA04t17975Z Brassica rapa HOM05D003449 ORTHO05D004133 1.0e-22 110.9 121 46.3
Thhalv10017878m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 1.0e-22 110.9 137 46.7
AT2G31865 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 1.3e-22 110.5 116 49.1
EL10Ac3g06174 Beta vulgaris HOM05D003449 ORTHO05D004133 1.3e-22 110.5 119 46.2
Carub.0004s1316 Capsella rubella HOM05D003449 ORTHO05D004133 1.3e-22 110.5 116 49.1
Eucgr.A00416 Eucalyptus grandis HOM05D003449 ORTHO05D004133 2.9e-22 109.4 126 47.6
SEGI_19112 Sequoiadendron giganteum HOM05D003449 ORTHO05D004133 2.9e-22 109.4 116 47.4
A04p24530 Brassica napus HOM05D003449 ORTHO05D004133 3.8e-22 109.0 121 45.5
Ca_14389_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 3.8e-22 109.0 117 46.2
Sed0014321 Sechium edule HOM05D003449 ORTHO05D004133 3.8e-22 109.0 117 47.9
A04p24550 Brassica napus HOM05D003449 ORTHO05D004133 6.6e-22 108.2 119 46.2
BraA04t17976Z Brassica rapa HOM05D003449 ORTHO05D004133 6.6e-22 108.2 119 46.2
BcaC02g07962 Brassica carinata HOM05D003449 ORTHO05D004133 8.6e-22 107.8 121 45.5
AL4G27150 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 1.1e-21 107.5 116 48.3
AT2G31870 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 1.1e-21 107.5 119 47.1
BraA05t20307Z Brassica rapa HOM05D003449 ORTHO05D004133 1.1e-21 107.5 120 47.5
unitig_92.g28209 Utricularia gibba HOM05D003449 ORTHO05D004133 1.1e-21 107.5 109 47.7
Carub.0004s1301 Capsella rubella HOM05D003449 ORTHO05D004133 1.5e-21 107.1 119 47.1
SGA_v2.0_scaffold37G14903 Striga asiatica HOM05D003449 ORTHO05D004133 1.5e-21 107.1 118 48.3
HPP92_007025 Vanilla planifolia HOM05D003449 ORTHO05D004133 1.5e-21 107.1 116 44.0
A05p13710 Brassica napus HOM05D003449 ORTHO05D004133 1.9e-21 106.7 120 47.5
C04p61430 Brassica napus HOM05D003449 ORTHO05D004133 1.9e-21 106.7 121 45.5
BolC4t27627H Brassica oleracea HOM05D003449 ORTHO05D004133 1.9e-21 106.7 121 45.5
HPP92_007075 Vanilla planifolia HOM05D003449 ORTHO05D004133 4.3e-21 105.5 116 44.0
Carub.0004s1315 Capsella rubella HOM05D003449 ORTHO05D004133 5.6e-21 105.1 121 46.3
PSO675G3785 Papaver somniferum HOM05D003449 ORTHO05D004133 5.6e-21 105.1 122 45.9
Sabra07G0115300 Salix brachista HOM05D003449 ORTHO05D004133 7.3e-21 104.8 119 47.1
Ah.06g182940 Amaranthus hybridus HOM05D003449 ORTHO05D004133 2.8e-20 102.8 119 42.9
BcaC02g11292 Brassica carinata HOM05D003449 ORTHO05D004133 4.7e-20 102.1 119 46.2
C04p17950 Brassica napus HOM05D003449 ORTHO05D004133 4.7e-20 102.1 119 46.2
BolC4t23342H Brassica oleracea HOM05D003449 ORTHO05D004133 4.7e-20 102.1 119 46.2
Os03g0843900 Oryza sativa ssp. japonica HOM05D003449 ORTHO05D004133 8.0e-20 101.3 118 43.2
AL4G27130 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 2.3e-19 99.8 119 44.5
BcaB02g10421 Brassica carinata HOM05D003449 ORTHO05D004133 3.0e-19 99.4 121 46.3
Atru.chr8.1215 Acer truncatum HOM05D003449 ORTHO05D004133 6.8e-19 98.2 68 64.7
Zm00001eb064190 Zea mays HOM05D003449 ORTHO05D004133 8.9e-19 97.8 117 41.9
SGA_v2.0_scaffold215G42309 Striga asiatica HOM05D003449 ORTHO05D004133 7.5e-18 94.7 121 44.6
Sabra17G0006000 Salix brachista HOM05D003449 ORTHO05D004133 1.3e-17 94.0 119 43.7
AUR62002371 Chenopodium quinoa HOM05D003449 ORTHO05D004133 1.7e-17 93.6 122 43.4
CARHR125540 Cardamine hirsuta HOM05D003449 ORTHO05D004133 8.3e-17 91.3 120 41.7
BcaB06g28446 Brassica carinata HOM05D003449 ORTHO05D004133 5.4e-16 88.6 119 42.9
EL10Ac1g02221 Beta vulgaris HOM05D003449 ORTHO05D004133 5.9e-15 85.1 120 40.0
CAN.G1011.3 Capsicum annuum HOM05D003449 ORTHO05D004133 1.7e-14 83.6 76 47.4
Gorai.009G402700 Gossypium raimondii HOM05D003449 ORTHO05D004133 1.7e-14 83.6 119 42.0
Phvul.002G040000 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 2.3e-14 83.2 68 57.4
CBR_g41704 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-14 82.8 122 39.3
Peaxi162Scf00057g02231 Petunia axillaris HOM05D003449 ORTHO05D004133 3.9e-14 82.4 66 54.5
Hund22678 Selenicereus undatus HOM05D003449 ORTHO05D004133 8.6e-14 81.3 64 54.7
Lj6C291G1 Lonicera japonica HOM05D003449 ORTHO05D004133 1.9e-13 80.1 56 66.1
SalBow3G3320 Salvia bowleyana HOM05D003449 ORTHO05D004133 1.9e-13 80.1 67 53.7
Pp3c4_17510 Physcomitrium patens HOM05D003449 ORTHO05D004133 1.2e-12 77.4 116 34.5
Mapoly0009s0113 Marchantia polymorpha HOM05D003449 ORTHO05D004133 2.1e-12 76.6 120 36.7
Nitab4.5_0003108g0040 Nicotiana tabacum HOM05D003449 ORTHO05D004133 4.7e-12 75.5 87 44.8
SMO351G0652 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 8.0e-12 74.7 120 33.3
AUR62023816 Chenopodium quinoa HOM05D003449 ORTHO05D004133 4.0e-11 72.4 66 43.9
TAR362G0584 Trochodendron aralioides HOM05D003449 ORTHO05D004133 2.6e-10 69.7 85 45.9
Peaxi162Scf00459g00129 Petunia axillaris HOM05D003449 ORTHO05D004133 9.8e-10 67.8 72 47.2
FAN09G1160 Fragaria x ananassa HOM05D003449 ORTHO05D044649 2.9e-09 66.2 37 78.4
SMO364G0163 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 6.4e-09 65.1 118 31.4
AUR62002491 Chenopodium quinoa HOM05D003449 ORTHO05D004133 2.4e-08 63.2 119 33.6
DCAR_011557 Daucus carota HOM05D003449 ORTHO05D004133 1.3e-06 57.4 44 61.4
Atru.chr8.1216 Acer truncatum HOM05D003449 ORTHO05D004133 2.3e-06 56.6 40 62.5
Cc03_g16130 Coffea canephora HOM05D003449 ORTHO05D044649 8.6e-06 54.7 68 44.1
Oeu022914.1 Olea europaea HOM05D003449 ORTHO05D004133 8.6e-06 54.7 38 65.8


User provided reference genes

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