Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.2e-48 196.1 90 100.0
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 8.6e-47 189.9 90 96.7
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.5e-43 179.1 90 91.1
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.0e-39 164.9 83 86.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.5e-38 162.5 90 83.3
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.5e-38 161.8 90 83.3
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.3e-38 161.4 90 82.2
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 4.3e-38 161.0 90 82.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 7.3e-38 160.2 89 82.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 7.3e-38 160.2 90 80.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.2e-37 159.5 89 80.9
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.2e-37 159.5 89 82.0
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.6e-37 159.1 81 87.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.1e-37 158.7 88 80.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.8e-37 158.3 91 78.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.8e-37 158.3 89 79.8
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.8e-37 158.3 88 78.4
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 3.6e-37 157.9 89 80.9
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 4.7e-37 157.5 83 83.1
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 4.7e-37 157.5 91 78.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 8.0e-37 156.8 89 78.7
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.0e-37 156.8 94 76.6
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.1e-36 156.4 90 78.9
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-36 156.0 89 78.7
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-36 156.0 89 78.7
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 4.0e-36 154.5 78 84.6
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 4.0e-36 154.5 90 78.9
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 4.0e-36 154.5 89 76.4
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 5.2e-36 154.1 91 78.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 6.8e-36 153.7 90 77.8
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 8.9e-36 153.3 87 79.3
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 8.9e-36 153.3 78 84.6
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 8.9e-36 153.3 78 84.6
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 8.9e-36 153.3 88 79.5
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.2e-35 152.9 93 76.3
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.5e-35 152.5 81 81.5
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.5e-35 152.5 79 82.3
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 87 78.2
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.6e-35 151.8 91 75.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.6e-35 151.8 83 79.5
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.6e-35 151.8 93 74.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 3.4e-35 151.4 90 76.7
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.4e-35 151.4 78 83.3
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 5.8e-35 150.6 88 78.4
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 5.8e-35 150.6 88 77.3
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 5.8e-35 150.6 90 77.8
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 7.5e-35 150.2 76 86.8
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.7e-34 149.1 78 80.8
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.9e-34 148.3 86 76.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.9e-34 148.3 77 80.5
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 2.9e-34 148.3 91 73.6
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 4.9e-34 147.5 89 74.2
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 6.4e-34 147.1 87 75.9
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 6.4e-34 147.1 76 82.9
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.9e-33 145.6 88 73.9
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 4.1e-33 144.4 88 75.0
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 5.4e-33 144.1 90 72.2
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 7.0e-33 143.7 78 78.2
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 7.0e-33 143.7 87 73.6
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 9.2e-33 143.3 88 72.7
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.2e-32 142.9 88 75.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 1.6e-32 142.5 81 75.3
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.6e-32 142.5 92 69.6
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.6e-32 142.5 76 80.3
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.7e-32 141.7 83 72.3
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 4.6e-32 141.0 76 78.9
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 6.0e-32 140.6 91 70.3
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 6.0e-32 140.6 79 74.7
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.3e-31 139.4 94 69.1
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 2.3e-31 138.7 76 77.6
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.3e-31 138.7 88 72.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.3e-31 138.7 89 68.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 5.1e-31 137.5 89 69.7
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.1e-30 136.3 88 70.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.1e-30 136.3 88 71.6
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.5e-30 135.2 76 73.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 5.6e-30 134.0 94 66.0
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 4.4e-27 124.4 135 49.6
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 4.1e-25 117.9 140 45.7
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 2.4e-20 102.1 84 61.9
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 6.8e-20 100.5 80 58.8
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 9.9e-19 96.7 200 33.5
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.2e-17 91.7 43 88.4
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 4.2e-17 91.3 42 90.5
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 3.0e-15 85.1 41 87.8
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 6.6e-15 84.0 41 82.9
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.1e-14 83.2 42 78.6
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.1e-13 79.0 46 76.1
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 5.3e-12 74.3 49 71.4
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 1.2e-11 73.2 50 72.0
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.5e-11 72.8 40 72.5
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.3e-10 69.7 50 64.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.7e-10 69.3 32 93.8
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.2e-09 65.1 42 69.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 3.5e-08 61.6 87 37.9
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 4.6e-08 61.2 79 40.5
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 7.8e-08 60.5 79 38.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 7.8e-08 60.5 79 38.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 7.8e-08 60.5 79 38.0
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 7.8e-08 60.5 79 38.0
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.3e-07 59.7 79 38.0
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.3e-07 59.7 79 38.0
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.7e-07 59.3 79 36.7
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.7e-07 59.3 81 35.8
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 3.0e-07 58.5 87 35.6
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 3.0e-07 58.5 87 35.6
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 5.1e-07 57.8 79 36.7
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 5.1e-07 57.8 79 36.7
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 5.1e-07 57.8 79 36.7
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 5.1e-07 57.8 79 36.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 6.6e-07 57.4 79 36.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 6.6e-07 57.4 79 36.7
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 6.6e-07 57.4 79 36.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 8.7e-07 57.0 79 36.7
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 8.7e-07 57.0 79 35.4
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 8.7e-07 57.0 79 36.7
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 1.1e-06 56.6 79 36.7
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.1e-06 56.6 87 34.5
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 36.7
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 35.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 36.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.5e-06 56.2 90 36.7
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 34.2
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.5e-06 56.2 87 35.6
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.9e-06 55.8 79 35.4
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.3e-06 55.1 79 34.2
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.3e-06 55.1 79 35.4
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 3.3e-06 55.1 77 36.4
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 3.3e-06 55.1 79 35.4
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 4.3e-06 54.7 77 33.8
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 4.3e-06 54.7 94 36.2
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 4.3e-06 54.7 79 35.4
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 4.3e-06 54.7 79 35.4
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 4.3e-06 54.7 77 35.1
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 4.3e-06 54.7 77 35.1
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 4.3e-06 54.7 79 34.2
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 4.3e-06 54.7 79 34.2
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 4.3e-06 54.7 79 35.4
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 5.6e-06 54.3 79 35.4
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 5.6e-06 54.3 79 35.4
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 5.6e-06 54.3 79 34.2
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 9.6e-06 53.5 79 34.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 9.6e-06 53.5 83 34.9
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 9.6e-06 53.5 83 33.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 9.6e-06 53.5 91 34.1


User provided reference genes

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